Analysis of interatomic Contacts of Structural Units in PDB entry:
9T00


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9T00 entry

There are 8 chains in PDB entry 9T00 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 273PHE 577
B
 ASP 689ASP 695
B
 ASP 697ASP 697
B
 GLN 699ARG 709
C
 SER 275PHE 577
D
 SER 692ASP 695
D
 ASP 697ASP 697
D
 GLN 699ARG 709
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9T00. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
282 287Right-handed alpha
Helix 2
AA2
A
289 293Right-handed 310
Helix 3
AA3
A
299 303Right-handed 310
Helix 4
AA4
A
308 316Right-handed 310
Helix 5
AA5
A
361 365Right-handed alpha
Helix 6
AA6
A
368 371Right-handed 310
Helix 7
AA7
A
375 377Right-handed 310
Helix 8
AA8
A
442 450Right-handed alpha
Helix 9
AA9
A
462 469Right-handed alpha
Helix 10
AB1
A
489 496Right-handed alpha
Helix 11
AB2
A
566 576Right-handed alpha
Helix 12
AB3
B
692 706Right-handed alpha
Helix 13
AB4
C
282 287Right-handed alpha
Helix 14
AB5
C
289 293Right-handed 310
Helix 15
AB6
C
299 303Right-handed 310
Helix 16
AB7
C
307 312Right-handed 310
Helix 17
AB8
C
361 365Right-handed alpha
Helix 18
AB9
C
368 371Right-handed 310
Helix 19
AC1
C
375 377Right-handed 310
Helix 20
AC2
C
442 450Right-handed alpha
Helix 21
AC3
C
462 469Right-handed alpha
Helix 22
AC4
C
489 496Right-handed alpha
Helix 23
AC5
C
566 576Right-handed alpha
Helix 24
AC6
D
693 706Right-handed alpha
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There are 6 sheets in PDB entry 9T00. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
481 486anti-parallel
Strand 3
A
455 460anti-parallel
Strand 4
A
528 532anti-parallel
Strand 5
A
539 545anti-parallel
Strand 6
A
558 562anti-parallel
Strand 7
A
505 508anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 399first strand
Strand 2
A
379 383anti-parallel
Strand 3
A
335 340anti-parallel
Strand 4
A
346 352anti-parallel
Strand 5
A
357 360anti-parallel
Strand 6
A
421 425anti-parallel
Strand 7
A
401 406anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 367first strand
Strand 2
A
372 373anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
325 326first strand
Strand 2
C
481 486anti-parallel
Strand 3
C
455 460anti-parallel
Strand 4
C
528 532anti-parallel
Strand 5
C
539 545anti-parallel
Strand 6
C
558 562anti-parallel
Strand 7
C
505 508anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
397 399first strand
Strand 2
C
379 383anti-parallel
Strand 3
C
335 340anti-parallel
Strand 4
C
345 352anti-parallel
Strand 5
C
357 360anti-parallel
Strand 6
C
421 425anti-parallel
Strand 7
C
401 406anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
366 367first strand
Strand 2
C
372 373anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il