Analysis of interatomic Contacts of Structural Units in PDB entry:
9T07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9T07 entry

There are 2 chains in PDB entry 9T07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 17LYS 1028
B
 VAL 436GLY 599
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 9T07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 54Right-handed alpha
Helix 2
AA2
A
58 62Right-handed 310
Helix 3
AA3
A
64 66Right-handed 310
Helix 4
AA4
A
88 93Right-handed alpha
Helix 5
AA5
A
108 121Right-handed alpha
Helix 6
AA6
A
125 130Right-handed alpha
Helix 7
AA7
A
133 156Right-handed alpha
Helix 8
AA8
A
158 167Right-handed alpha
Helix 9
AA9
A
212 220Right-handed alpha
Helix 10
AB1
A
255 258Right-handed 310
Helix 11
AB2
A
259 269Right-handed alpha
Helix 12
AB3
A
279 288Right-handed alpha
Helix 13
AB4
A
382 384Right-handed 310
Helix 14
AB5
A
487 497Right-handed alpha
Helix 15
AB6
A
506 517Right-handed alpha
Helix 16
AB7
A
524 534Right-handed alpha
Helix 17
AB8
A
534 542Right-handed alpha
Helix 18
AB9
A
545 553Right-handed alpha
Helix 19
AC1
A
557 570Right-handed alpha
Helix 20
AC2
A
575 583Right-handed alpha
Helix 21
AC3
A
589 601Right-handed alpha
Helix 22
AC4
A
604 620Right-handed alpha
Helix 23
AC5
A
627 640Right-handed alpha
Helix 24
AC6
A
640 653Right-handed alpha
Helix 25
AC7
A
660 674Right-handed alpha
Helix 26
AC8
A
677 704Right-handed alpha
Helix 27
AC9
A
707 721Right-handed alpha
Helix 28
AD1
A
721 729Right-handed alpha
Helix 29
AD2
A
745 749Right-handed 310
Helix 30
AD3
A
768 771Right-handed 310
Helix 31
AD4
A
784 804Right-handed alpha
Helix 32
AD5
A
834 839Right-handed alpha
Helix 33
AD6
A
854 863Right-handed alpha
Helix 34
AD7
A
865 890Right-handed alpha
Helix 35
AD8
A
935 943Right-handed alpha
Helix 36
AD9
A
949 970Right-handed alpha
Helix 37
AE1
A
970 981Right-handed alpha
Helix 38
AE2
A
982 985Right-handed 310
Helix 39
AE3
A
991 1003Right-handed alpha
Helix 40
AE4
A
1007 1027Right-handed alpha
Helix 41
AE5
B
441 513Right-handed alpha
Helix 42
AE6
B
521 588Right-handed alpha
Helix 43
AE7
B
590 599Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 9T07. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 37first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
98 103parallel
Strand 4
A
68 73anti-parallel
Strand 5
A
79 81anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 206first strand
Strand 2
A
191 196anti-parallel
Strand 3
A
275 278parallel
Strand 4
A
239 243anti-parallel
Strand 5
A
248 250anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 380first strand
Strand 2
A
322 329anti-parallel
Strand 3
A
470 475anti-parallel
Strand 4
A
435 440anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 358first strand
Strand 2
A
340 349anti-parallel
Strand 3
A
363 364anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 358first strand
Strand 2
A
340 349anti-parallel
Strand 3
A
388 397anti-parallel
Strand 4
A
416 424anti-parallel
Strand 5
A
442 443anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
731 732first strand
Strand 2
A
740 741anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
750 751first strand
Strand 2
A
759 764anti-parallel
Strand 3
A
773 780anti-parallel
Strand 4
A
822 827anti-parallel
Strand 5
A
815 819anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
831 833first strand
Strand 2
A
899 902anti-parallel
Strand 3
A
907 909anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il