Analysis of interatomic Contacts of Structural Units in PDB entry:
9T17


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9T17 entry

There are 3 chains in PDB entry 9T17 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2VAL 440
B
 MET 1ASP 427
C
 SER 9THR 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 9T17. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 29Right-handed alpha
Helix 2
AA2
A
47 51Right-handed 310
Helix 3
AA3
A
71 81Right-handed alpha
Helix 4
AA4
A
82 86Right-handed 310
Helix 5
AA5
A
88 90Right-handed 310
Helix 6
AA6
A
102 108Right-handed alpha
Helix 7
AA7
A
110 128Right-handed alpha
Helix 8
AA8
A
143 161Right-handed alpha
Helix 9
AA9
A
182 197Right-handed alpha
Helix 10
AB1
A
205 217Right-handed alpha
Helix 11
AB2
A
223 240Right-handed alpha
Helix 12
AB3
A
241 243Right-handed 310
Helix 13
AB4
A
251 260Right-handed alpha
Helix 14
AB5
A
277 282Right-handed alpha
Helix 15
AB6
A
287 296Right-handed alpha
Helix 16
AB7
A
297 301Right-handed 310
Helix 17
AB8
A
306 310Right-handed 310
Helix 18
AB9
A
324 338Right-handed alpha
Helix 19
AC1
A
384 400Right-handed alpha
Helix 20
AC2
A
404 410Right-handed alpha
Helix 21
AC3
A
415 437Right-handed alpha
Helix 22
AC4
B
10 29Right-handed alpha
Helix 23
AC5
B
41 46Right-handed alpha
Helix 24
AC6
B
47 49Right-handed 310
Helix 25
AC7
B
69 78Right-handed alpha
Helix 26
AC8
B
81 85Right-handed 310
Helix 27
AC9
B
86 88Right-handed 310
Helix 28
AD1
B
100 106Right-handed alpha
Helix 29
AD2
B
107 126Right-handed alpha
Helix 30
AD3
B
142 159Right-handed alpha
Helix 31
AD4
B
180 196Right-handed alpha
Helix 32
AD5
B
204 214Right-handed alpha
Helix 33
AD6
B
221 242Right-handed alpha
Helix 34
AD7
B
249 258Right-handed alpha
Helix 35
AD8
B
285 294Right-handed alpha
Helix 36
AD9
B
295 299Right-handed 310
Helix 37
AE1
B
304 308Right-handed 310
Helix 38
AE2
B
322 337Right-handed alpha
Helix 39
AE3
B
338 341Right-handed 310
Helix 40
AE4
B
374 390Right-handed alpha
Helix 41
AE5
B
394 400Right-handed alpha
Helix 42
AE6
B
404 427Right-handed alpha
Helix 43
AE7
C
20 27Right-handed alpha
Helix 44
AE8
C
58 66Right-handed alpha
Helix 45
AE9
C
66 76Right-handed alpha
Helix 46
AF1
C
91 97Right-handed alpha
Helix 47
AF2
C
102 106Right-handed 310
Helix 48
AF3
C
107 122Right-handed alpha
Helix 49
AF4
C
176 191Right-handed alpha
Helix 50
AF5
C
238 243Right-handed alpha
Helix 51
AF6
C
246 272Right-handed alpha
Helix 52
AF7
C
278 281Right-handed 310
Helix 53
AF8
C
282 288Right-handed alpha
Helix 54
AF9
C
310 325Right-handed alpha
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There are 10 sheets in PDB entry 9T17. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
3 9parallel
Strand 4
A
132 140parallel
Strand 5
A
165 171parallel
Strand 6
A
200 203parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
61 63anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 273first strand
Strand 2
A
373 381anti-parallel
Strand 3
A
312 321anti-parallel
Strand 4
A
351 356parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 92first strand
Strand 2
B
63 67parallel
Strand 3
B
2 9parallel
Strand 4
B
129 138parallel
Strand 5
B
163 170parallel
Strand 6
B
198 203parallel
Strand 7
B
265 271parallel
Strand 8
B
364 371anti-parallel
Strand 9
B
310 318anti-parallel
Strand 10
B
349 354parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 54first strand
Strand 2
B
58 61anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 53first strand
Strand 2
C
12 16parallel
Strand 3
C
299 304parallel
Strand 4
C
80 85parallel
Strand 5
C
223 232parallel
Strand 6
C
206 217anti-parallel
Strand 7
C
127 139anti-parallel
Strand 8
C
142 145anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 53first strand
Strand 2
C
12 16parallel
Strand 3
C
299 304parallel
Strand 4
C
80 85parallel
Strand 5
C
223 232parallel
Strand 6
C
206 217anti-parallel
Strand 7
C
127 139anti-parallel
Strand 8
C
172 173anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 35first strand
Strand 2
C
39 42anti-parallel
Strand 3
C
45 48anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
156 158first strand
Strand 2
C
164 166anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
193 194first strand
Strand 2
C
202 203anti-parallel
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