Analysis of interatomic Contacts of Structural Units in PDB entry:
9T1A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9T1A entry

There are 31 chains in PDB entry 9T1A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
Y
 G 1 A 76
Z
 C 1 A 76
a
 A 191 U 744
a
 G 748 G 954
a
 G 956 A 1938
a
 U 1940 C 1961
a
 U 1963 G 2029
a
 A 2031 U 2068
a
 A 2070 G 2250
a
 G 2252 G 2444
a
 G 2446 A 2448
a
 A 2450 C 2456
a
 G 2458 A 2497
a
 C 2499 U 2500
a
 G 2502 G 2502
a
 G 2505 C 2579
a
 G 2581 G 2603
a
 C 2606 G 2677
b
 U 87 C 90
c
 VAL 220VAL 245
d
 GLY 120ASN 149
d
 THR 151ALA 162
e
 GLY 56TRP 78
i
 HIS 77ILE 84
k
 GLY 28MET 55
l
 PHE 9VAL 80
l
 GLY 83LEU 95
q
 PHE 77TYR 83
r
 ARG 88ASP 94
v
 ALA 2GLU 17
z
 ALA 2THR 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 9T1A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
c
221 225Right-handed 310
Helix 2
AA2
d
121 126Right-handed alpha
Helix 3
AA3
k
37 41Right-handed 310
Helix 4
AA4
r
88 92Right-handed 310
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There is 1 sheet (AA1) in PDB entry 9T1A.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
l
41 42first strand
Strand 2
l
88 94anti-parallel
Strand 3
l
71 75anti-parallel
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