Analysis of interatomic Contacts of Structural Units in PDB entry:
9T29


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9T29 entry

There is 1 chain in PDB entry 9T29 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 12ASP 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9T29. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 30Right-handed 310
Helix 2
AA2
A
31 42Right-handed alpha
Helix 3
AA3
A
43 47Right-handed 310
Helix 4
AA4
A
99 107Right-handed alpha
Helix 5
AA5
A
118 129Right-handed alpha
Helix 6
AA6
A
160 162Right-handed 310
Helix 7
AA7
A
163 170Right-handed alpha
Helix 8
AA8
A
195 199Right-handed 310
Helix 9
AA9
A
217 219Right-handed 310
Helix 10
AB1
A
220 232Right-handed alpha
Helix 11
AB2
A
232 239Right-handed alpha
Helix 12
AB3
A
241 246Right-handed 310
Helix 13
AB4
A
251 258Right-handed alpha
Helix 14
AB5
A
298 300Right-handed 310
Helix 15
AB6
A
301 308Right-handed alpha
Helix 16
AB7
A
322 330Right-handed alpha
Helix 17
AB8
A
333 342Right-handed alpha
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There are 3 sheets in PDB entry 9T29. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
49 52parallel
Strand 3
A
272 275anti-parallel
Strand 4
A
200 208anti-parallel
Strand 5
A
289 296anti-parallel
Strand 6
A
180 184anti-parallel
Strand 7
A
136 142anti-parallel
Strand 8
A
76 83anti-parallel
Strand 9
A
86 93anti-parallel
Strand 10
A
248 250anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
97 98anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 193first strand
Strand 2
A
280 285anti-parallel
Strand 3
A
211 216anti-parallel
Strand 4
A
263 267anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il