Analysis of interatomic Contacts of Structural Units in PDB entry:
9T38

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9T38 entry

There are 6 chains in PDB entry 9T38 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	PRO 11	SER 394
B	ASP 5	ILE 162
A	CYS 1292	LEU 1430
F	PRO 11	SER 394
E	ASP 5	ILE 162
D	CYS 1292	LEU 1430

There are 43 helices in PDB entry 9T38. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	24	40	Right-handed alpha
Helix 2	AA2	C	46	52	Right-handed alpha
Helix 3	AA3	C	84	94	Right-handed alpha
Helix 4	AA4	C	113	127	Right-handed alpha
Helix 5	AA5	C	143	161	Right-handed alpha
Helix 6	AA6	C	164	168	Right-handed 310
Helix 7	AA7	C	174	180	Right-handed alpha
Helix 8	AA8	C	182	200	Right-handed alpha
Helix 9	AA9	C	205	209	Right-handed 310
Helix 10	AB1	C	283	287	Right-handed 310
Helix 11	AB2	B	6	15	Right-handed alpha
Helix 12	AB3	B	38	43	Right-handed alpha
Helix 13	AB4	B	78	95	Right-handed alpha
Helix 14	AB5	B	100	103	Right-handed 310
Helix 15	AB6	B	111	133	Right-handed alpha
Helix 16	AB7	B	136	147	Right-handed alpha
Helix 17	AB8	A	1293	1304	Right-handed alpha
Helix 18	AB9	A	1313	1324	Right-handed alpha
Helix 19	AC1	A	1331	1358	Right-handed alpha
Helix 20	AC2	A	1372	1376	Right-handed 310
Helix 21	AC3	A	1380	1382	Right-handed 310
Helix 22	AC4	F	24	40	Right-handed alpha
Helix 23	AC5	F	46	52	Right-handed alpha
Helix 24	AC6	F	84	94	Right-handed alpha
Helix 25	AC7	F	113	127	Right-handed alpha
Helix 26	AC8	F	137	141	Right-handed 310
Helix 27	AC9	F	143	161	Right-handed alpha
Helix 28	AD1	F	164	168	Right-handed 310
Helix 29	AD2	F	174	181	Right-handed alpha
Helix 30	AD3	F	182	200	Right-handed alpha
Helix 31	AD4	F	205	209	Right-handed 310
Helix 32	AD5	F	283	287	Right-handed 310
Helix 33	AD6	E	6	15	Right-handed alpha
Helix 34	AD7	E	38	43	Right-handed alpha
Helix 35	AD8	E	78	95	Right-handed alpha
Helix 36	AD9	E	101	103	Right-handed 310
Helix 37	AE1	E	111	133	Right-handed alpha
Helix 38	AE2	E	136	147	Right-handed alpha
Helix 39	AE3	D	1293	1304	Right-handed alpha
Helix 40	AE4	D	1313	1324	Right-handed alpha
Helix 41	AE5	D	1331	1358	Right-handed alpha
Helix 42	AE6	D	1372	1376	Right-handed 310
Helix 43	AE7	D	1380	1382	Right-handed 310

There are 19 sheets in PDB entry 9T38. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	71	first strand
Strand 2	C	76	81	anti-parallel
Strand 3	C	12	18	parallel
Strand 4	C	102	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	170	172	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	58	first strand
Strand 2	C	61	64	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	214	first strand
Strand 2	C	292	294	anti-parallel
Strand 3	C	242	246	anti-parallel
Strand 4	C	252	261	anti-parallel
Strand 5	C	274	279	anti-parallel
Strand 6	C	225	231	anti-parallel
Strand 7	C	217	221	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	214	first strand
Strand 2	C	292	294	anti-parallel
Strand 3	C	242	246	anti-parallel
Strand 4	C	252	261	anti-parallel
Strand 5	C	264	266	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	238	first strand
Strand 2	C	268	270	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	311	first strand
Strand 2	C	356	368	anti-parallel
Strand 3	C	337	343	anti-parallel
Strand 4	C	330	332	anti-parallel
Strand 5	C	374	379	anti-parallel
Strand 6	C	382	392	anti-parallel
Strand 7	C	301	311	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	34	first strand
Strand 2	B	159	161	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	153	154	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	106	first strand
Strand 2	B	109	110	anti-parallel
Strand 3	A	1425	1427	anti-parallel
Strand 4	A	1326	1328	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1366	1369	first strand
Strand 2	A	1384	1387	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	71	first strand
Strand 2	F	76	81	anti-parallel
Strand 3	F	12	18	parallel
Strand 4	F	102	107	parallel
Strand 5	F	131	136	parallel
Strand 6	F	170	172	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	55	58	first strand
Strand 2	F	61	64	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	212	214	first strand
Strand 2	F	292	294	anti-parallel
Strand 3	F	242	246	anti-parallel
Strand 4	F	252	255	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	217	221	first strand
Strand 2	F	225	231	anti-parallel
Strand 3	F	274	278	anti-parallel
Strand 4	F	258	261	anti-parallel
Strand 5	F	264	266	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	236	238	first strand
Strand 2	F	268	270	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	301	311	first strand
Strand 2	F	356	368	anti-parallel
Strand 3	F	337	343	anti-parallel
Strand 4	F	330	332	anti-parallel
Strand 5	F	374	379	anti-parallel
Strand 6	F	382	392	anti-parallel
Strand 7	F	301	311	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	34	first strand
Strand 2	E	158	161	parallel
Strand 3	E	151	155	anti-parallel
Strand 4	E	58	59	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	105	106	first strand
Strand 2	E	109	110	anti-parallel
Strand 3	D	1425	1427	anti-parallel
Strand 4	D	1326	1328	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1366	1369	first strand
Strand 2	D	1384	1387	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9T38

Analysis of interatomic Contacts of Structural Units in PDB entry:
9T38