Analysis of interatomic Contacts of Structural Units in PDB entry:
9T4P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9T4P entry

There is 1 chain in PDB entry 9T4P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3SER 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 9T4P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 23Right-handed alpha
Helix 2
AA2
A
108 112Right-handed alpha
Helix 3
AA3
A
189 193Right-handed 310
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There are 3 sheets in PDB entry 9T4P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 123first strand
Strand 2
A
116 118anti-parallel
Strand 3
A
5 11parallel
Strand 4
A
79 86anti-parallel
Strand 5
A
91 100anti-parallel
Strand 6
A
103 107anti-parallel
Strand 7
A
134 137anti-parallel
Strand 8
A
125 129anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
165 169anti-parallel
Strand 3
A
153 157anti-parallel
Strand 4
A
196 198anti-parallel
Strand 5
A
204 213anti-parallel
Strand 6
A
219 224anti-parallel
Strand 7
A
179 184anti-parallel
Strand 8
A
172 176anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
38 39anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il