Analysis of interatomic Contacts of Structural Units in PDB entry:
9T4U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9T4U entry

There are 6 chains in PDB entry 9T4U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 6	VAL 498
C	ASP 6	VAL 498
B	ASP 6	VAL 498
D	ASP 6	VAL 498
E	ASP 6	VAL 498
F	ASP 6	VAL 498

There are115 helices in PDB entry 9T4U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	29	Right-handed alpha
Helix 2	AA2	A	38	50	Right-handed alpha
Helix 3	AA3	A	100	117	Right-handed alpha
Helix 4	AA4	A	132	136	Right-handed 310
Helix 5	AA5	A	137	155	Right-handed alpha
Helix 6	AA6	A	172	186	Right-handed alpha
Helix 7	AA7	A	202	206	Right-handed 310
Helix 8	AA8	A	213	228	Right-handed alpha
Helix 9	AA9	A	229	237	Right-handed alpha
Helix 10	AB1	A	253	266	Right-handed alpha
Helix 11	AB2	A	287	299	Right-handed alpha
Helix 12	AB3	A	313	317	Right-handed 310
Helix 13	AB4	A	353	364	Right-handed alpha
Helix 14	AB5	A	369	374	Right-handed alpha
Helix 15	AB6	A	375	391	Right-handed alpha
Helix 16	AB7	A	398	422	Right-handed alpha
Helix 17	AB8	A	433	442	Right-handed alpha
Helix 18	AB9	A	444	472	Right-handed alpha
Helix 19	AC1	A	476	497	Right-handed alpha
Helix 20	AC2	C	8	29	Right-handed alpha
Helix 21	AC3	C	38	50	Right-handed alpha
Helix 22	AC4	C	100	117	Right-handed alpha
Helix 23	AC5	C	132	136	Right-handed 310
Helix 24	AC6	C	137	155	Right-handed alpha
Helix 25	AC7	C	172	186	Right-handed alpha
Helix 26	AC8	C	193	198	Right-handed 310
Helix 27	AC9	C	202	206	Right-handed 310
Helix 28	AD1	C	213	228	Right-handed alpha
Helix 29	AD2	C	229	237	Right-handed alpha
Helix 30	AD3	C	253	266	Right-handed alpha
Helix 31	AD4	C	287	299	Right-handed alpha
Helix 32	AD5	C	353	364	Right-handed alpha
Helix 33	AD6	C	369	374	Right-handed alpha
Helix 34	AD7	C	375	391	Right-handed alpha
Helix 35	AD8	C	398	422	Right-handed alpha
Helix 36	AD9	C	433	442	Right-handed alpha
Helix 37	AE1	C	444	472	Right-handed alpha
Helix 38	AE2	C	476	497	Right-handed alpha
Helix 39	AE3	B	8	29	Right-handed alpha
Helix 40	AE4	B	30	32	Right-handed 310
Helix 41	AE5	B	38	53	Right-handed alpha
Helix 42	AE6	B	100	117	Right-handed alpha
Helix 43	AE7	B	132	136	Right-handed 310
Helix 44	AE8	B	137	155	Right-handed alpha
Helix 45	AE9	B	172	186	Right-handed alpha
Helix 46	AF1	B	202	206	Right-handed 310
Helix 47	AF2	B	213	228	Right-handed alpha
Helix 48	AF3	B	229	237	Right-handed alpha
Helix 49	AF4	B	253	266	Right-handed alpha
Helix 50	AF5	B	287	299	Right-handed alpha
Helix 51	AF6	B	313	317	Right-handed 310
Helix 52	AF7	B	353	364	Right-handed alpha
Helix 53	AF8	B	369	374	Right-handed alpha
Helix 54	AF9	B	375	391	Right-handed alpha
Helix 55	AG1	B	398	422	Right-handed alpha
Helix 56	AG2	B	433	442	Right-handed alpha
Helix 57	AG3	B	444	472	Right-handed alpha
Helix 58	AG4	B	476	497	Right-handed alpha
Helix 59	AG5	D	8	29	Right-handed alpha
Helix 60	AG6	D	38	50	Right-handed alpha
Helix 61	AG7	D	100	117	Right-handed alpha
Helix 62	AG8	D	132	136	Right-handed 310
Helix 63	AG9	D	137	155	Right-handed alpha
Helix 64	AH1	D	173	186	Right-handed alpha
Helix 65	AH2	D	202	206	Right-handed 310
Helix 66	AH3	D	213	228	Right-handed alpha
Helix 67	AH4	D	229	237	Right-handed alpha
Helix 68	AH5	D	253	266	Right-handed alpha
Helix 69	AH6	D	287	299	Right-handed alpha
Helix 70	AH7	D	313	317	Right-handed 310
Helix 71	AH8	D	353	364	Right-handed alpha
Helix 72	AH9	D	369	374	Right-handed alpha
Helix 73	AI1	D	375	391	Right-handed alpha
Helix 74	AI2	D	398	422	Right-handed alpha
Helix 75	AI3	D	433	442	Right-handed alpha
Helix 76	AI4	D	444	472	Right-handed alpha
Helix 77	AI5	D	476	497	Right-handed alpha
Helix 78	AI6	E	8	29	Right-handed alpha
Helix 79	AI7	E	38	50	Right-handed alpha
Helix 80	AI8	E	100	117	Right-handed alpha
Helix 81	AI9	E	132	136	Right-handed 310
Helix 82	AJ1	E	137	155	Right-handed alpha
Helix 83	AJ2	E	172	186	Right-handed alpha
Helix 84	AJ3	E	213	228	Right-handed alpha
Helix 85	AJ4	E	229	237	Right-handed alpha
Helix 86	AJ5	E	253	266	Right-handed alpha
Helix 87	AJ6	E	287	299	Right-handed alpha
Helix 88	AJ7	E	313	317	Right-handed 310
Helix 89	AJ8	E	353	364	Right-handed alpha
Helix 90	AJ9	E	369	374	Right-handed alpha
Helix 91	AK1	E	375	391	Right-handed alpha
Helix 92	AK2	E	398	422	Right-handed alpha
Helix 93	AK3	E	433	442	Right-handed alpha
Helix 94	AK4	E	444	472	Right-handed alpha
Helix 95	AK5	E	476	497	Right-handed alpha
Helix 96	AK6	F	8	29	Right-handed alpha
Helix 97	AK7	F	38	50	Right-handed alpha
Helix 98	AK8	F	100	117	Right-handed alpha
Helix 99	AK9	F	132	136	Right-handed 310
Helix 100	AL1	F	137	155	Right-handed alpha
Helix 101	AL2	F	172	186	Right-handed alpha
Helix 102	AL3	F	193	197	Right-handed 310
Helix 103	AL4	F	202	206	Right-handed 310
Helix 104	AL5	F	213	229	Right-handed alpha
Helix 105	AL6	F	229	237	Right-handed alpha
Helix 106	AL7	F	253	266	Right-handed alpha
Helix 107	AL8	F	287	299	Right-handed alpha
Helix 108	AL9	F	313	317	Right-handed 310
Helix 109	AM1	F	353	364	Right-handed alpha
Helix 110	AM2	F	369	374	Right-handed alpha
Helix 111	AM3	F	375	391	Right-handed alpha
Helix 112	AM4	F	398	422	Right-handed alpha
Helix 113	AM5	F	433	442	Right-handed alpha
Helix 114	AM6	F	444	472	Right-handed alpha
Helix 115	AM7	F	476	497	Right-handed alpha

There are 14 sheets in PDB entry 9T4U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	167	first strand
Strand 2	A	89	95	parallel
Strand 3	A	125	129	parallel
Strand 4	A	72	81	anti-parallel
Strand 5	A	57	66	anti-parallel
Strand 6	E	57	66	anti-parallel
Strand 7	E	72	81	anti-parallel
Strand 8	E	123	129	anti-parallel
Strand 9	E	89	95	parallel
Strand 10	E	163	167	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	249	first strand
Strand 2	A	269	275	parallel
Strand 3	A	278	281	anti-parallel
Strand 4	A	308	309	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	322	first strand
Strand 2	A	343	345	parallel
Strand 3	A	366	368	parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	166	first strand
Strand 2	C	89	95	parallel
Strand 3	C	125	129	parallel
Strand 4	C	72	81	anti-parallel
Strand 5	C	57	66	anti-parallel
Strand 6	F	57	66	anti-parallel
Strand 7	F	72	81	anti-parallel
Strand 8	F	125	129	anti-parallel
Strand 9	F	89	95	parallel
Strand 10	F	163	167	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	309	first strand
Strand 2	C	278	281	anti-parallel
Strand 3	C	269	275	anti-parallel
Strand 4	C	246	250	parallel
Strand 5	C	321	324	parallel
Strand 6	C	343	345	parallel
Strand 7	C	366	368	parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	167	first strand
Strand 2	B	89	95	parallel
Strand 3	B	123	129	parallel
Strand 4	B	72	81	anti-parallel
Strand 5	B	57	66	anti-parallel
Strand 6	D	57	66	anti-parallel
Strand 7	D	72	81	anti-parallel
Strand 8	D	125	129	anti-parallel
Strand 9	D	89	95	parallel
Strand 10	D	163	167	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	249	first strand
Strand 2	B	269	275	parallel
Strand 3	B	278	281	anti-parallel
Strand 4	B	308	309	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	343	345	parallel
Strand 3	B	366	368	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	246	249	first strand
Strand 2	D	269	275	parallel
Strand 3	D	278	281	anti-parallel
Strand 4	D	308	309	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	321	322	first strand
Strand 2	D	343	345	parallel
Strand 3	D	366	368	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	246	249	first strand
Strand 2	E	269	275	parallel
Strand 3	E	278	281	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	321	322	first strand
Strand 2	E	343	345	parallel
Strand 3	E	366	368	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	246	249	first strand
Strand 2	F	269	275	parallel
Strand 3	F	278	281	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	321	322	first strand
Strand 2	F	343	345	parallel
Strand 3	F	366	368	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9T4U

Analysis of interatomic Contacts of Structural Units in PDB entry:
9T4U