Analysis of interatomic Contacts of Structural Units in PDB entry:
9T5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9T5J entry

There are 3 chains in PDB entry 9T5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 359SER 608
B
 HIS 18PRO 271
C
 PRO 2GLY 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 9T5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
359 378Right-handed alpha
Helix 2
AA2
A
379 388Right-handed alpha
Helix 3
AA3
A
429 434Right-handed alpha
Helix 4
AA4
A
438 442Right-handed 310
Helix 5
AA5
A
448 460Right-handed alpha
Helix 6
AA6
A
494 512Right-handed alpha
Helix 7
AA7
A
513 519Right-handed alpha
Helix 8
AA8
A
524 537Right-handed alpha
Helix 9
AA9
A
549 569Right-handed alpha
Helix 10
AB1
A
574 591Right-handed alpha
Helix 11
AB2
A
594 604Right-handed alpha
Helix 12
AB3
B
31 46Right-handed alpha
Helix 13
AB4
B
70 74Right-handed alpha
Helix 14
AB5
B
75 84Right-handed alpha
Helix 15
AB6
B
86 101Right-handed alpha
Helix 16
AB7
B
101 113Right-handed alpha
Helix 17
AB8
B
126 132Right-handed alpha
Helix 18
AB9
B
133 147Right-handed alpha
Helix 19
AC1
B
162 181Right-handed alpha
Helix 20
AC2
B
196 205Right-handed alpha
Helix 21
AC3
B
205 217Right-handed alpha
Helix 22
AC4
B
221 235Right-handed alpha
Helix 23
AC5
B
236 238Right-handed 310
Helix 24
AC6
B
250 269Right-handed alpha
Helix 25
AC7
C
15 30Right-handed alpha
Helix 26
AC8
C
54 59Right-handed alpha
Helix 27
AC9
C
74 87Right-handed alpha
Helix 28
AD1
C
88 93Right-handed alpha
Helix 29
AD2
C
97 100Right-handed 310
Helix 30
AD3
C
111 116Right-handed alpha
Helix 31
AD4
C
118 130Right-handed alpha
Helix 32
AD5
C
143 146Right-handed 310
Helix 33
AD6
C
147 165Right-handed alpha
Helix 34
AD7
C
175 179Right-handed 310
Helix 35
AD8
C
180 191Right-handed alpha
Helix 36
AD9
C
195 200Right-handed alpha
Helix 37
AE1
C
207 225Right-handed alpha
Helix 38
AE2
C
226 228Right-handed 310
Helix 39
AE3
C
237 253Right-handed alpha
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There are 2 sheets in PDB entry 9T5J. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 69first strand
Strand 2
B
51 54parallel
Strand 3
B
118 122parallel
Strand 4
B
20 26parallel
Strand 5
B
149 156parallel
Strand 6
B
184 189parallel
Strand 7
B
239 242parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 53first strand
Strand 2
C
35 38parallel
Strand 3
C
102 106parallel
Strand 4
C
3 9parallel
Strand 5
C
132 141parallel
Strand 6
C
169 174parallel
Strand 7
C
230 232parallel
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