Analysis of interatomic Contacts of Structural Units in PDB entry:
9T5K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9T5K entry

There is 1 chain in PDB entry 9T5K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 2THR 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 9T5K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 18Right-handed alpha
Helix 2
AA2
A
45 61Right-handed alpha
Helix 3
AA3
A
66 79Right-handed alpha
Helix 4
AA4
A
84 93Right-handed alpha
Helix 5
AA5
A
124 136Right-handed alpha
Helix 6
AA6
A
144 149Right-handed alpha
Helix 7
AA7
A
154 177Right-handed alpha
Helix 8
AA8
A
189 197Right-handed alpha
Helix 9
AA9
A
201 205Right-handed 310
Helix 10
AB1
A
207 221Right-handed alpha
Helix 11
AB2
A
222 237Right-handed alpha
Helix 12
AB3
A
243 259Right-handed alpha
Helix 13
AB4
A
261 272Right-handed alpha
Helix 14
AB5
A
276 283Right-handed 310
Helix 15
AB6
A
284 299Right-handed alpha
Helix 16
AB7
A
300 306Right-handed 310
Helix 17
AB8
A
307 312Right-handed alpha
Helix 18
AB9
A
313 323Right-handed 310
Helix 19
AC1
A
324 339Right-handed alpha
Helix 20
AC2
A
353 365Right-handed alpha
Helix 21
AC3
A
372 380Right-handed alpha
Helix 22
AC4
A
384 397Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 9T5K. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 41first strand
Strand 2
A
98 105parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 109first strand
Strand 2
A
112 113anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il