Analysis of interatomic Contacts of Structural Units in PDB entry:
9T5M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9T5M entry

There are 6 chains in PDB entry 9T5M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 15	GLN 848
C	PRO 15	GLN 848
B	PRO 15	GLN 848
D	PRO 15	GLN 848
F	PRO 15	GLN 848
E	PRO 15	GLN 848

There are202 helices in PDB entry 9T5M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	21	Right-handed alpha
Helix 2	AA2	A	22	49	Right-handed alpha
Helix 3	AA3	A	142	157	Right-handed alpha
Helix 4	AA4	A	160	180	Right-handed alpha
Helix 5	AA5	A	181	185	Right-handed 310
Helix 6	AA6	A	186	206	Right-handed alpha
Helix 7	AA7	A	207	216	Right-handed alpha
Helix 8	AA8	A	278	299	Right-handed alpha
Helix 9	AA9	A	302	328	Right-handed alpha
Helix 10	AB1	A	358	389	Right-handed alpha
Helix 11	AB2	A	397	404	Right-handed alpha
Helix 12	AB3	A	413	427	Right-handed alpha
Helix 13	AB4	A	427	435	Right-handed alpha
Helix 14	AB5	A	436	438	Right-handed 310
Helix 15	AB6	A	439	455	Right-handed alpha
Helix 16	AB7	A	456	464	Right-handed alpha
Helix 17	AB8	A	483	489	Right-handed 310
Helix 18	AB9	A	506	512	Right-handed 310
Helix 19	AC1	A	529	539	Right-handed alpha
Helix 20	AC2	A	548	552	Right-handed 310
Helix 21	AC3	A	553	559	Right-handed 310
Helix 22	AC4	A	583	587	Right-handed 310
Helix 23	AC5	A	603	613	Right-handed 310
Helix 24	AC6	A	628	634	Right-handed 310
Helix 25	AC7	A	651	657	Right-handed 310
Helix 26	AC8	A	673	682	Right-handed 310
Helix 27	AC9	A	699	705	Right-handed 310
Helix 28	AD1	A	722	728	Right-handed 310
Helix 29	AD2	A	745	751	Right-handed 310
Helix 30	AD3	A	768	774	Right-handed 310
Helix 31	AD4	A	791	797	Right-handed 310
Helix 32	AD5	A	814	820	Right-handed 310
Helix 33	AD6	A	831	837	Right-handed alpha
Helix 34	AD7	A	839	848	Right-handed alpha
Helix 35	AD8	C	16	21	Right-handed alpha
Helix 36	AD9	C	22	49	Right-handed alpha
Helix 37	AE1	C	142	157	Right-handed alpha
Helix 38	AE2	C	159	163	Right-handed 310
Helix 39	AE3	C	164	179	Right-handed alpha
Helix 40	AE4	C	181	186	Right-handed alpha
Helix 41	AE5	C	186	206	Right-handed alpha
Helix 42	AE6	C	207	215	Right-handed alpha
Helix 43	AE7	C	278	298	Right-handed alpha
Helix 44	AE8	C	302	326	Right-handed alpha
Helix 45	AE9	C	329	333	Right-handed 310
Helix 46	AF1	C	358	390	Right-handed alpha
Helix 47	AF2	C	397	405	Right-handed alpha
Helix 48	AF3	C	413	427	Right-handed alpha
Helix 49	AF4	C	427	435	Right-handed alpha
Helix 50	AF5	C	436	438	Right-handed 310
Helix 51	AF6	C	439	455	Right-handed alpha
Helix 52	AF7	C	456	462	Right-handed alpha
Helix 53	AF8	C	483	489	Right-handed 310
Helix 54	AF9	C	506	510	Right-handed 310
Helix 55	AG1	C	529	539	Right-handed alpha
Helix 56	AG2	C	548	552	Right-handed 310
Helix 57	AG3	C	553	559	Right-handed 310
Helix 58	AG4	C	583	587	Right-handed 310
Helix 59	AG5	C	603	613	Right-handed 310
Helix 60	AG6	C	628	633	Right-handed alpha
Helix 61	AG7	C	653	657	Right-handed 310
Helix 62	AG8	C	673	682	Right-handed 310
Helix 63	AG9	C	699	705	Right-handed 310
Helix 64	AH1	C	722	728	Right-handed 310
Helix 65	AH2	C	747	751	Right-handed 310
Helix 66	AH3	C	768	774	Right-handed 310
Helix 67	AH4	C	791	797	Right-handed 310
Helix 68	AH5	C	814	820	Right-handed 310
Helix 69	AH6	C	831	838	Right-handed alpha
Helix 70	AH7	C	839	848	Right-handed alpha
Helix 71	AH8	B	16	21	Right-handed alpha
Helix 72	AH9	B	22	49	Right-handed alpha
Helix 73	AI1	B	142	155	Right-handed alpha
Helix 74	AI2	B	159	163	Right-handed 310
Helix 75	AI3	B	164	179	Right-handed alpha
Helix 76	AI4	B	181	186	Right-handed alpha
Helix 77	AI5	B	189	205	Right-handed alpha
Helix 78	AI6	B	206	215	Right-handed alpha
Helix 79	AI7	B	278	300	Right-handed alpha
Helix 80	AI8	B	302	328	Right-handed alpha
Helix 81	AI9	B	358	390	Right-handed alpha
Helix 82	AJ1	B	397	404	Right-handed alpha
Helix 83	AJ2	B	413	427	Right-handed alpha
Helix 84	AJ3	B	427	437	Right-handed alpha
Helix 85	AJ4	B	439	455	Right-handed alpha
Helix 86	AJ5	B	456	464	Right-handed alpha
Helix 87	AJ6	B	483	489	Right-handed 310
Helix 88	AJ7	B	506	512	Right-handed 310
Helix 89	AJ8	B	530	539	Right-handed alpha
Helix 90	AJ9	B	548	552	Right-handed 310
Helix 91	AK1	B	553	559	Right-handed 310
Helix 92	AK2	B	583	587	Right-handed 310
Helix 93	AK3	B	605	610	Right-handed alpha
Helix 94	AK4	B	611	613	Right-handed 310
Helix 95	AK5	B	628	634	Right-handed 310
Helix 96	AK6	B	651	657	Right-handed 310
Helix 97	AK7	B	673	682	Right-handed 310
Helix 98	AK8	B	699	705	Right-handed 310
Helix 99	AK9	B	722	728	Right-handed 310
Helix 100	AL1	B	745	751	Right-handed 310
Helix 101	AL2	B	768	774	Right-handed 310
Helix 102	AL3	B	791	797	Right-handed 310
Helix 103	AL4	B	814	820	Right-handed 310
Helix 104	AL5	B	831	837	Right-handed alpha
Helix 105	AL6	B	839	848	Right-handed alpha
Helix 106	AL7	D	16	21	Right-handed alpha
Helix 107	AL8	D	22	49	Right-handed alpha
Helix 108	AL9	D	142	155	Right-handed alpha
Helix 109	AM1	D	159	163	Right-handed 310
Helix 110	AM2	D	164	180	Right-handed alpha
Helix 111	AM3	D	181	186	Right-handed alpha
Helix 112	AM4	D	186	206	Right-handed alpha
Helix 113	AM5	D	206	215	Right-handed alpha
Helix 114	AM6	D	278	300	Right-handed alpha
Helix 115	AM7	D	302	326	Right-handed alpha
Helix 116	AM8	D	358	387	Right-handed alpha
Helix 117	AM9	D	397	405	Right-handed alpha
Helix 118	AN1	D	413	427	Right-handed alpha
Helix 119	AN2	D	427	437	Right-handed alpha
Helix 120	AN3	D	440	454	Right-handed alpha
Helix 121	AN4	D	456	464	Right-handed alpha
Helix 122	AN5	D	483	488	Right-handed alpha
Helix 123	AN6	D	506	512	Right-handed 310
Helix 124	AN7	D	530	539	Right-handed alpha
Helix 125	AN8	D	548	552	Right-handed 310
Helix 126	AN9	D	553	559	Right-handed 310
Helix 127	AO1	D	603	613	Right-handed 310
Helix 128	AO2	D	629	634	Right-handed 310
Helix 129	AO3	D	651	656	Right-handed alpha
Helix 130	AO4	D	673	682	Right-handed 310
Helix 131	AO5	D	699	705	Right-handed 310
Helix 132	AO6	D	722	727	Right-handed 310
Helix 133	AO7	D	745	751	Right-handed 310
Helix 134	AO8	D	770	774	Right-handed 310
Helix 135	AO9	D	791	797	Right-handed 310
Helix 136	AP1	D	815	820	Right-handed 310
Helix 137	AP2	D	831	837	Right-handed alpha
Helix 138	AP3	D	839	847	Right-handed alpha
Helix 139	AP4	F	22	49	Right-handed alpha
Helix 140	AP5	F	142	157	Right-handed alpha
Helix 141	AP6	F	159	179	Right-handed alpha
Helix 142	AP7	F	181	186	Right-handed alpha
Helix 143	AP8	F	186	204	Right-handed alpha
Helix 144	AP9	F	206	215	Right-handed alpha
Helix 145	AQ1	F	278	300	Right-handed alpha
Helix 146	AQ2	F	302	326	Right-handed alpha
Helix 147	AQ3	F	358	390	Right-handed alpha
Helix 148	AQ4	F	397	405	Right-handed alpha
Helix 149	AQ5	F	413	427	Right-handed alpha
Helix 150	AQ6	F	427	433	Right-handed alpha
Helix 151	AQ7	F	434	438	Right-handed 310
Helix 152	AQ8	F	439	455	Right-handed alpha
Helix 153	AQ9	F	457	463	Right-handed alpha
Helix 154	AR1	F	484	489	Right-handed 310
Helix 155	AR2	F	506	510	Right-handed 310
Helix 156	AR3	F	530	538	Right-handed alpha
Helix 157	AR4	F	548	552	Right-handed 310
Helix 158	AR5	F	553	559	Right-handed 310
Helix 159	AR6	F	603	613	Right-handed 310
Helix 160	AR7	F	628	633	Right-handed alpha
Helix 161	AR8	F	653	657	Right-handed 310
Helix 162	AR9	F	673	682	Right-handed 310
Helix 163	AS1	F	699	705	Right-handed 310
Helix 164	AS2	F	722	728	Right-handed 310
Helix 165	AS3	F	747	751	Right-handed 310
Helix 166	AS4	F	768	774	Right-handed 310
Helix 167	AS5	F	791	797	Right-handed 310
Helix 168	AS6	F	814	820	Right-handed 310
Helix 169	AS7	F	831	838	Right-handed alpha
Helix 170	AS8	F	839	847	Right-handed alpha
Helix 171	AS9	E	16	21	Right-handed alpha
Helix 172	AT1	E	22	49	Right-handed alpha
Helix 173	AT2	E	142	157	Right-handed alpha
Helix 174	AT3	E	159	180	Right-handed alpha
Helix 175	AT4	E	181	186	Right-handed alpha
Helix 176	AT5	E	186	206	Right-handed alpha
Helix 177	AT6	E	207	215	Right-handed alpha
Helix 178	AT7	E	278	299	Right-handed alpha
Helix 179	AT8	E	302	328	Right-handed alpha
Helix 180	AT9	E	358	389	Right-handed alpha
Helix 181	AU1	E	397	405	Right-handed alpha
Helix 182	AU2	E	413	427	Right-handed alpha
Helix 183	AU3	E	427	437	Right-handed alpha
Helix 184	AU4	E	439	455	Right-handed alpha
Helix 185	AU5	E	456	464	Right-handed alpha
Helix 186	AU6	E	483	489	Right-handed 310
Helix 187	AU7	E	506	512	Right-handed 310
Helix 188	AU8	E	530	539	Right-handed alpha
Helix 189	AU9	E	548	552	Right-handed 310
Helix 190	AV1	E	553	558	Right-handed 310
Helix 191	AV2	E	603	613	Right-handed 310
Helix 192	AV3	E	628	634	Right-handed 310
Helix 193	AV4	E	651	656	Right-handed alpha
Helix 194	AV5	E	673	682	Right-handed 310
Helix 195	AV6	E	699	705	Right-handed 310
Helix 196	AV7	E	722	727	Right-handed 310
Helix 197	AV8	E	745	751	Right-handed 310
Helix 198	AV9	E	770	774	Right-handed 310
Helix 199	AW1	E	791	797	Right-handed 310
Helix 200	AW2	E	814	820	Right-handed 310
Helix 201	AW3	E	831	837	Right-handed alpha
Helix 202	AW4	E	839	847	Right-handed alpha

There are 24 sheets in PDB entry 9T5M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	339	first strand
Strand 2	A	352	355	anti-parallel

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There are 17 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	466	first strand
Strand 2	A	472	477	anti-parallel
Strand 3	A	494	498	parallel
Strand 4	A	517	521	parallel
Strand 5	A	541	545	parallel
Strand 6	A	564	568	parallel
Strand 7	A	592	596	parallel
Strand 8	A	615	619	parallel
Strand 9	A	639	641	parallel
Strand 10	A	662	664	parallel
Strand 11	A	687	689	parallel
Strand 12	A	710	712	parallel
Strand 13	A	733	735	parallel
Strand 14	A	756	758	parallel
Strand 15	A	779	781	parallel
Strand 16	A	802	804	parallel
Strand 17	A	828	829	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	504	505	first strand
Strand 2	A	526	527	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	339	first strand
Strand 2	C	352	355	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	464	466	first strand
Strand 2	C	472	477	anti-parallel
Strand 3	C	494	498	parallel
Strand 4	C	517	521	parallel
Strand 5	C	541	545	parallel
Strand 6	C	564	568	parallel
Strand 7	C	592	595	parallel
Strand 8	C	615	619	parallel
Strand 9	C	639	643	parallel
Strand 10	C	665	666	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	503	505	first strand
Strand 2	C	525	527	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	688	689	first strand
Strand 2	C	711	712	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	756	758	first strand
Strand 2	C	779	781	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	339	first strand
Strand 2	B	352	355	anti-parallel

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There are 17 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	465	466	first strand
Strand 2	B	472	477	anti-parallel
Strand 3	B	494	498	parallel
Strand 4	B	517	521	parallel
Strand 5	B	541	545	parallel
Strand 6	B	564	568	parallel
Strand 7	B	592	596	parallel
Strand 8	B	615	619	parallel
Strand 9	B	639	641	parallel
Strand 10	B	662	664	parallel
Strand 11	B	687	689	parallel
Strand 12	B	710	712	parallel
Strand 13	B	733	735	parallel
Strand 14	B	756	758	parallel
Strand 15	B	779	781	parallel
Strand 16	B	802	804	parallel
Strand 17	B	828	829	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	504	505	first strand
Strand 2	B	526	527	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	336	339	first strand
Strand 2	D	352	355	anti-parallel

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There are 12 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	465	466	first strand
Strand 2	D	472	477	anti-parallel
Strand 3	D	494	498	parallel
Strand 4	D	517	521	parallel
Strand 5	D	541	545	parallel
Strand 6	D	564	568	parallel
Strand 7	D	592	597	parallel
Strand 8	D	615	620	parallel
Strand 9	D	639	641	parallel
Strand 10	D	662	664	parallel
Strand 11	D	687	689	parallel
Strand 12	D	711	712	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	504	505	first strand
Strand 2	D	526	527	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	756	758	first strand
Strand 2	D	779	781	parallel
Strand 3	D	802	804	parallel
Strand 4	D	828	829	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	336	339	first strand
Strand 2	F	352	355	anti-parallel

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There are 12 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	464	466	first strand
Strand 2	F	472	477	anti-parallel
Strand 3	F	494	498	parallel
Strand 4	F	517	521	parallel
Strand 5	F	541	545	parallel
Strand 6	F	566	568	parallel
Strand 7	F	592	596	parallel
Strand 8	F	615	619	parallel
Strand 9	F	639	643	parallel
Strand 10	F	662	666	parallel
Strand 11	F	687	689	parallel
Strand 12	F	711	712	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	503	505	first strand
Strand 2	F	525	527	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	734	735	first strand
Strand 2	F	756	758	parallel
Strand 3	F	779	781	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	803	804	first strand
Strand 2	F	828	829	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	336	339	first strand
Strand 2	E	352	355	anti-parallel

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There are 12 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	465	466	first strand
Strand 2	E	472	477	anti-parallel
Strand 3	E	494	498	parallel
Strand 4	E	517	521	parallel
Strand 5	E	541	545	parallel
Strand 6	E	564	568	parallel
Strand 7	E	592	596	parallel
Strand 8	E	615	619	parallel
Strand 9	E	639	641	parallel
Strand 10	E	662	664	parallel
Strand 11	E	687	689	parallel
Strand 12	E	711	712	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	503	505	first strand
Strand 2	E	525	527	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	756	758	first strand
Strand 2	E	779	781	parallel
Strand 3	E	802	804	parallel
Strand 4	E	828	829	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9T5M

Analysis of interatomic Contacts of Structural Units in PDB entry:
9T5M