Analysis of interatomic Contacts of Structural Units in PDB entry:
9T5P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9T5P entry

There are 7 chains in PDB entry 9T5P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 15	ASN 409
B	PRO 15	ALA 805
C	PRO 15	GLU 410
D	PRO 15	ASN 409
E	PRO 15	THR 456
F	PRO 15	GLU 454
J	SER 0	ALA 125

There are106 helices in PDB entry 9T5P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	21	Right-handed 310
Helix 2	AA2	A	22	49	Right-handed alpha
Helix 3	AA3	A	102	117	Right-handed alpha
Helix 4	AA4	A	119	146	Right-handed alpha
Helix 5	AA5	A	146	165	Right-handed alpha
Helix 6	AA6	A	166	176	Right-handed alpha
Helix 7	AA7	A	233	255	Right-handed alpha
Helix 8	AA8	A	259	286	Right-handed alpha
Helix 9	AA9	A	314	346	Right-handed alpha
Helix 10	AB1	A	354	360	Right-handed alpha
Helix 11	AB2	A	372	383	Right-handed alpha
Helix 12	AB3	A	383	391	Right-handed alpha
Helix 13	AB4	A	392	394	Right-handed 310
Helix 14	AB5	A	395	409	Right-handed alpha
Helix 15	AB6	B	16	21	Right-handed 310
Helix 16	AB7	B	22	49	Right-handed alpha
Helix 17	AB8	B	102	117	Right-handed alpha
Helix 18	AB9	B	119	146	Right-handed alpha
Helix 19	AC1	B	146	166	Right-handed alpha
Helix 20	AC2	B	166	176	Right-handed alpha
Helix 21	AC3	B	233	256	Right-handed alpha
Helix 22	AC4	B	259	287	Right-handed alpha
Helix 23	AC5	B	314	344	Right-handed alpha
Helix 24	AC6	B	353	360	Right-handed alpha
Helix 25	AC7	B	372	383	Right-handed alpha
Helix 26	AC8	B	383	392	Right-handed alpha
Helix 27	AC9	B	393	395	Right-handed 310
Helix 28	AD1	B	397	411	Right-handed alpha
Helix 29	AD2	B	412	417	Right-handed alpha
Helix 30	AD3	B	439	445	Right-handed 310
Helix 31	AD4	B	462	468	Right-handed 310
Helix 32	AD5	B	484	495	Right-handed alpha
Helix 33	AD6	B	504	508	Right-handed 310
Helix 34	AD7	B	509	515	Right-handed 310
Helix 35	AD8	B	538	543	Right-handed 310
Helix 36	AD9	B	584	589	Right-handed alpha
Helix 37	AE1	B	607	613	Right-handed 310
Helix 38	AE2	B	629	638	Right-handed 310
Helix 39	AE3	B	655	661	Right-handed 310
Helix 40	AE4	B	678	684	Right-handed 310
Helix 41	AE5	B	701	707	Right-handed 310
Helix 42	AE6	B	724	730	Right-handed 310
Helix 43	AE7	B	747	753	Right-handed 310
Helix 44	AE8	B	770	776	Right-handed 310
Helix 45	AE9	B	780	782	Right-handed 310
Helix 46	AF1	B	787	794	Right-handed alpha
Helix 47	AF2	B	795	805	Right-handed alpha
Helix 48	AF3	C	16	21	Right-handed alpha
Helix 49	AF4	C	22	49	Right-handed alpha
Helix 50	AF5	C	102	117	Right-handed alpha
Helix 51	AF6	C	119	146	Right-handed alpha
Helix 52	AF7	C	146	166	Right-handed alpha
Helix 53	AF8	C	166	176	Right-handed alpha
Helix 54	AF9	C	233	258	Right-handed alpha
Helix 55	AG1	C	259	286	Right-handed alpha
Helix 56	AG2	C	287	289	Right-handed 310
Helix 57	AG3	C	300	304	Right-handed alpha
Helix 58	AG4	C	314	343	Right-handed alpha
Helix 59	AG5	C	353	360	Right-handed alpha
Helix 60	AG6	C	372	383	Right-handed alpha
Helix 61	AG7	C	383	392	Right-handed alpha
Helix 62	AG8	C	395	410	Right-handed alpha
Helix 63	AG9	D	16	21	Right-handed alpha
Helix 64	AH1	D	22	49	Right-handed alpha
Helix 65	AH2	D	102	117	Right-handed alpha
Helix 66	AH3	D	119	146	Right-handed alpha
Helix 67	AH4	D	146	166	Right-handed alpha
Helix 68	AH5	D	166	176	Right-handed alpha
Helix 69	AH6	D	233	256	Right-handed alpha
Helix 70	AH7	D	259	287	Right-handed alpha
Helix 71	AH8	D	314	344	Right-handed alpha
Helix 72	AH9	D	353	360	Right-handed alpha
Helix 73	AI1	D	372	383	Right-handed alpha
Helix 74	AI2	D	383	392	Right-handed alpha
Helix 75	AI3	D	397	409	Right-handed alpha
Helix 76	AI4	E	22	49	Right-handed alpha
Helix 77	AI5	E	143	157	Right-handed alpha
Helix 78	AI6	E	159	164	Right-handed alpha
Helix 79	AI7	E	164	186	Right-handed alpha
Helix 80	AI8	E	186	205	Right-handed alpha
Helix 81	AI9	E	206	216	Right-handed alpha
Helix 82	AJ1	E	282	298	Right-handed alpha
Helix 83	AJ2	E	302	331	Right-handed alpha
Helix 84	AJ3	E	358	387	Right-handed alpha
Helix 85	AJ4	E	395	408	Right-handed alpha
Helix 86	AJ5	E	419	427	Right-handed alpha
Helix 87	AJ6	E	427	439	Right-handed alpha
Helix 88	AJ7	E	439	455	Right-handed alpha
Helix 89	AJ8	F	22	49	Right-handed alpha
Helix 90	AJ9	F	143	157	Right-handed alpha
Helix 91	AK1	F	159	164	Right-handed alpha
Helix 92	AK2	F	164	186	Right-handed alpha
Helix 93	AK3	F	186	206	Right-handed alpha
Helix 94	AK4	F	206	216	Right-handed alpha
Helix 95	AK5	F	279	298	Right-handed alpha
Helix 96	AK6	F	302	331	Right-handed alpha
Helix 97	AK7	F	343	348	Right-handed alpha
Helix 98	AK8	F	358	387	Right-handed alpha
Helix 99	AK9	F	395	408	Right-handed alpha
Helix 100	AL1	F	419	421	Right-handed 310
Helix 101	AL2	F	422	427	Right-handed alpha
Helix 102	AL3	F	428	439	Right-handed alpha
Helix 103	AL4	F	439	454	Right-handed alpha
Helix 104	AL5	J	27	31	Right-handed 310
Helix 105	AL6	J	87	91	Right-handed 310
Helix 106	AL7	J	108	112	Right-handed 310

There are 10 sheets in PDB entry 9T5P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	295	first strand
Strand 2	A	308	311	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	308	311	anti-parallel
Strand 3	B	292	295	anti-parallel

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There are 17 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	421	422	first strand
Strand 2	B	428	433	anti-parallel
Strand 3	B	450	454	parallel
Strand 4	B	473	477	parallel
Strand 5	B	497	501	parallel
Strand 6	B	520	524	parallel
Strand 7	B	548	552	parallel
Strand 8	B	571	575	parallel
Strand 9	B	595	599	parallel
Strand 10	B	618	620	parallel
Strand 11	B	643	645	parallel
Strand 12	B	666	668	parallel
Strand 13	B	689	691	parallel
Strand 14	B	712	714	parallel
Strand 15	B	735	737	parallel
Strand 16	B	758	760	parallel
Strand 17	B	784	785	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	305	311	anti-parallel
Strand 3	C	292	299	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	292	296	first strand
Strand 2	D	307	311	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	336	339	first strand
Strand 2	E	352	355	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	336	339	first strand
Strand 2	F	352	355	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	7	first strand
Strand 2	J	18	24	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	68	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	13	first strand
Strand 2	J	119	124	parallel
Strand 3	J	92	99	anti-parallel
Strand 4	J	33	39	anti-parallel
Strand 5	J	46	52	anti-parallel
Strand 6	J	58	60	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	13	first strand
Strand 2	J	119	124	parallel
Strand 3	J	92	99	anti-parallel
Strand 4	J	114	115	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9T5P

Analysis of interatomic Contacts of Structural Units in PDB entry:
9T5P