Analysis of interatomic Contacts of Structural Units in PDB entry:
9T5Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9T5Q entry

There are 4 chains in PDB entry 9T5Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 403	ALA 805
I	SER 0	ALA 125
B	ARG 403	ASP 806
C	PRO -1	ALA 125

There are 51 helices in PDB entry 9T5Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	403	411	Right-handed alpha
Helix 2	AA2	A	412	420	Right-handed alpha
Helix 3	AA3	A	439	445	Right-handed 310
Helix 4	AA4	A	462	468	Right-handed 310
Helix 5	AA5	A	484	495	Right-handed alpha
Helix 6	AA6	A	504	508	Right-handed 310
Helix 7	AA7	A	509	515	Right-handed 310
Helix 8	AA8	A	538	543	Right-handed 310
Helix 9	AA9	A	559	565	Right-handed alpha
Helix 10	AB1	A	566	568	Right-handed 310
Helix 11	AB2	A	584	589	Right-handed alpha
Helix 12	AB3	A	607	613	Right-handed 310
Helix 13	AB4	A	629	636	Right-handed 310
Helix 14	AB5	A	655	661	Right-handed 310
Helix 15	AB6	A	678	684	Right-handed 310
Helix 16	AB7	A	701	707	Right-handed 310
Helix 17	AB8	A	724	730	Right-handed 310
Helix 18	AB9	A	747	753	Right-handed 310
Helix 19	AC1	A	770	776	Right-handed 310
Helix 20	AC2	A	780	782	Right-handed 310
Helix 21	AC3	A	787	792	Right-handed alpha
Helix 22	AC4	A	795	805	Right-handed alpha
Helix 23	AC5	I	27	31	Right-handed 310
Helix 24	AC6	I	62	65	Right-handed 310
Helix 25	AC7	I	87	91	Right-handed 310
Helix 26	AC8	I	108	112	Right-handed 310
Helix 27	AC9	B	404	411	Right-handed alpha
Helix 28	AD1	B	412	418	Right-handed alpha
Helix 29	AD2	B	439	445	Right-handed 310
Helix 30	AD3	B	462	468	Right-handed 310
Helix 31	AD4	B	484	495	Right-handed alpha
Helix 32	AD5	B	504	508	Right-handed 310
Helix 33	AD6	B	509	515	Right-handed 310
Helix 34	AD7	B	534	543	Right-handed 310
Helix 35	AD8	B	559	567	Right-handed alpha
Helix 36	AD9	B	585	590	Right-handed 310
Helix 37	AE1	B	607	613	Right-handed 310
Helix 38	AE2	B	629	636	Right-handed 310
Helix 39	AE3	B	655	661	Right-handed 310
Helix 40	AE4	B	678	684	Right-handed 310
Helix 41	AE5	B	701	707	Right-handed 310
Helix 42	AE6	B	724	730	Right-handed 310
Helix 43	AE7	B	747	753	Right-handed 310
Helix 44	AE8	B	770	776	Right-handed 310
Helix 45	AE9	B	780	782	Right-handed 310
Helix 46	AF1	B	787	793	Right-handed alpha
Helix 47	AF2	B	795	804	Right-handed alpha
Helix 48	AF3	C	27	31	Right-handed 310
Helix 49	AF4	C	62	65	Right-handed 310
Helix 50	AF5	C	87	91	Right-handed 310
Helix 51	AF6	C	108	112	Right-handed 310

There are 10 sheets in PDB entry 9T5Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 17 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	422	first strand
Strand 2	A	428	433	anti-parallel
Strand 3	A	450	454	parallel
Strand 4	A	473	477	parallel
Strand 5	A	497	501	parallel
Strand 6	A	520	524	parallel
Strand 7	A	548	552	parallel
Strand 8	A	571	575	parallel
Strand 9	A	595	599	parallel
Strand 10	A	618	620	parallel
Strand 11	A	643	645	parallel
Strand 12	A	666	668	parallel
Strand 13	A	689	691	parallel
Strand 14	A	712	714	parallel
Strand 15	A	735	737	parallel
Strand 16	A	758	760	parallel
Strand 17	A	784	785	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	460	461	first strand
Strand 2	A	482	483	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	18	24	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	13	first strand
Strand 2	I	119	124	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	33	39	anti-parallel
Strand 5	I	46	52	anti-parallel
Strand 6	I	58	60	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	13	first strand
Strand 2	I	119	124	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	114	115	anti-parallel

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There are 17 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	421	422	first strand
Strand 2	B	428	433	anti-parallel
Strand 3	B	450	454	parallel
Strand 4	B	473	477	parallel
Strand 5	B	497	501	parallel
Strand 6	B	520	524	parallel
Strand 7	B	548	552	parallel
Strand 8	B	571	575	parallel
Strand 9	B	595	599	parallel
Strand 10	B	618	620	parallel
Strand 11	B	643	645	parallel
Strand 12	B	666	668	parallel
Strand 13	B	689	691	parallel
Strand 14	B	712	714	parallel
Strand 15	B	735	737	parallel
Strand 16	B	758	760	parallel
Strand 17	B	784	785	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	461	first strand
Strand 2	B	481	483	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	18	24	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	13	first strand
Strand 2	C	119	124	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	33	39	anti-parallel
Strand 5	C	46	52	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	13	first strand
Strand 2	C	119	124	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	114	115	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9T5Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
9T5Q