Analysis of interatomic Contacts of Structural Units in PDB entry:
9T5U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9T5U entry

There are 17 chains in PDB entry 9T5U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 12	ALA 345
B	GLY 2	ARG 505
C	ALA 17	ASP 465
D	ASN 11	LEU 352
E	THR 4	GLY 81
F	TYR 14	ARG 46
H	ALA 2	LEU 65
I	LEU 2	PHE 37
J	GLY 4	ILE 39
K	LYS 9	ARG 45
L	GLU 2	ASN 39
M	GLN 2	GLU 33
R	ASP 4	PHE 36
T	GLU 2	ILE 29
X	THR 2	ARG 38
Y	LYS 9	LEU 40
Z	MET 1	VAL 61

There are111 helices in PDB entry 9T5U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	23	Right-handed alpha
Helix 2	AA2	A	31	56	Right-handed alpha
Helix 3	AA3	A	71	75	Right-handed 310
Helix 4	AA4	A	96	100	Right-handed 310
Helix 5	AA5	A	102	109	Right-handed alpha
Helix 6	AA6	A	110	138	Right-handed alpha
Helix 7	AA7	A	143	160	Right-handed alpha
Helix 8	AA8	A	160	167	Right-handed alpha
Helix 9	AA9	A	168	172	Right-handed 310
Helix 10	AB1	A	177	192	Right-handed alpha
Helix 11	AB2	A	193	195	Right-handed 310
Helix 12	AB3	A	196	223	Right-handed alpha
Helix 13	AB4	A	233	238	Right-handed 310
Helix 14	AB5	A	248	260	Right-handed alpha
Helix 15	AB6	A	261	265	Right-handed 310
Helix 16	AB7	A	268	295	Right-handed alpha
Helix 17	AB8	A	317	333	Right-handed alpha
Helix 18	AB9	B	4	13	Right-handed 310
Helix 19	AC1	B	15	45	Right-handed alpha
Helix 20	AC2	B	54	58	Right-handed 310
Helix 21	AC3	B	62	70	Right-handed alpha
Helix 22	AC4	B	92	117	Right-handed alpha
Helix 23	AC5	B	120	124	Right-handed 310
Helix 24	AC6	B	134	157	Right-handed alpha
Helix 25	AC7	B	186	191	Right-handed 310
Helix 26	AC8	B	194	219	Right-handed alpha
Helix 27	AC9	B	222	229	Right-handed alpha
Helix 28	AD1	B	233	259	Right-handed alpha
Helix 29	AD2	B	264	269	Right-handed alpha
Helix 30	AD3	B	271	277	Right-handed alpha
Helix 31	AD4	B	278	294	Right-handed alpha
Helix 32	AD5	B	297	304	Right-handed alpha
Helix 33	AD6	B	306	313	Right-handed alpha
Helix 34	AD7	B	314	318	Right-handed 310
Helix 35	AD8	B	329	333	Right-handed 310
Helix 36	AD9	B	391	396	Right-handed alpha
Helix 37	AE1	B	413	425	Right-handed alpha
Helix 38	AE2	B	446	475	Right-handed alpha
Helix 39	AE3	B	501	505	Right-handed 310
Helix 40	AE4	C	22	27	Right-handed alpha
Helix 41	AE5	C	29	38	Right-handed 310
Helix 42	AE6	C	40	69	Right-handed alpha
Helix 43	AE7	C	75	79	Right-handed 310
Helix 44	AE8	C	83	90	Right-handed alpha
Helix 45	AE9	C	95	99	Right-handed 310
Helix 46	AF1	C	103	130	Right-handed alpha
Helix 47	AF2	C	136	140	Right-handed 310
Helix 48	AF3	C	145	174	Right-handed alpha
Helix 49	AF4	C	197	202	Right-handed alpha
Helix 50	AF5	C	202	207	Right-handed alpha
Helix 51	AF6	C	214	219	Right-handed 310
Helix 52	AF7	C	221	246	Right-handed alpha
Helix 53	AF8	C	249	253	Right-handed 310
Helix 54	AF9	C	259	285	Right-handed alpha
Helix 55	AG1	C	290	295	Right-handed alpha
Helix 56	AG2	C	297	316	Right-handed alpha
Helix 57	AG3	C	345	351	Right-handed 310
Helix 58	AG4	C	358	360	Right-handed 310
Helix 59	AG5	C	368	375	Right-handed alpha
Helix 60	AG6	C	377	389	Right-handed alpha
Helix 61	AG7	C	413	446	Right-handed alpha
Helix 62	AG8	C	456	461	Right-handed alpha
Helix 63	AG9	D	12	23	Right-handed alpha
Helix 64	AH1	D	33	54	Right-handed alpha
Helix 65	AH2	D	66	70	Right-handed 310
Helix 66	AH3	D	82	86	Right-handed 310
Helix 67	AH4	D	100	107	Right-handed alpha
Helix 68	AH5	D	108	137	Right-handed alpha
Helix 69	AH6	D	140	146	Right-handed alpha
Helix 70	AH7	D	146	158	Right-handed alpha
Helix 71	AH8	D	158	164	Right-handed alpha
Helix 72	AH9	D	166	170	Right-handed 310
Helix 73	AI1	D	175	190	Right-handed alpha
Helix 74	AI2	D	191	193	Right-handed 310
Helix 75	AI3	D	194	220	Right-handed alpha
Helix 76	AI4	D	230	235	Right-handed 310
Helix 77	AI5	D	245	257	Right-handed alpha
Helix 78	AI6	D	263	291	Right-handed alpha
Helix 79	AI7	D	298	308	Right-handed alpha
Helix 80	AI8	D	313	334	Right-handed alpha
Helix 81	AI9	D	335	338	Right-handed 310
Helix 82	AJ1	E	9	14	Right-handed alpha
Helix 83	AJ2	E	16	34	Right-handed alpha
Helix 84	AJ3	E	34	40	Right-handed alpha
Helix 85	AJ4	E	41	48	Right-handed alpha
Helix 86	AJ5	E	71	81	Right-handed alpha
Helix 87	AJ6	F	18	42	Right-handed alpha
Helix 88	AJ7	H	5	12	Right-handed alpha
Helix 89	AJ8	H	13	16	Right-handed 310
Helix 90	AJ9	H	27	50	Right-handed alpha
Helix 91	AK1	H	61	65	Right-handed 310
Helix 92	AK2	I	2	24	Right-handed alpha
Helix 93	AK3	I	26	30	Right-handed 310
Helix 94	AK4	J	8	34	Right-handed alpha
Helix 95	AK5	K	11	16	Right-handed 310
Helix 96	AK6	K	17	22	Right-handed alpha
Helix 97	AK7	K	23	25	Right-handed 310
Helix 98	AK8	K	26	42	Right-handed alpha
Helix 99	AK9	L	15	39	Right-handed alpha
Helix 100	AL1	M	6	32	Right-handed alpha
Helix 101	AL2	R	5	11	Right-handed alpha
Helix 102	AL3	R	11	26	Right-handed alpha
Helix 103	AL4	R	26	36	Right-handed alpha
Helix 104	AL5	T	2	23	Right-handed alpha
Helix 105	AL6	X	2	20	Right-handed alpha
Helix 106	AL7	X	20	34	Right-handed alpha
Helix 107	AL8	Y	10	26	Right-handed alpha
Helix 108	AL9	Y	26	36	Right-handed alpha
Helix 109	AM1	Z	2	21	Right-handed alpha
Helix 110	AM2	Z	22	29	Right-handed alpha
Helix 111	AM3	Z	32	61	Right-handed alpha

There are 8 sheets in PDB entry 9T5U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	175	176	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	168	first strand
Strand 2	B	177	179	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	380	first strand
Strand 2	B	369	371	anti-parallel
Strand 3	B	353	356	anti-parallel
Strand 4	B	336	347	anti-parallel
Strand 5	B	398	402	anti-parallel
Strand 6	B	410	411	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	380	first strand
Strand 2	B	369	371	anti-parallel
Strand 3	B	353	356	anti-parallel
Strand 4	B	336	347	anti-parallel
Strand 5	B	429	433	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	179	first strand
Strand 2	C	187	189	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	335	first strand
Strand 2	C	341	343	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	362	363	first strand
Strand 2	C	366	367	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	78	first strand
Strand 2	D	173	174	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9T5U

Analysis of interatomic Contacts of Structural Units in PDB entry:
9T5U