Analysis of interatomic Contacts of Structural Units in PDB entry:
9T5W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9T5W entry

There are 2 chains in PDB entry 9T5W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	PHE 751
B	GLN 1	CYS 459

There are 26 helices in PDB entry 9T5W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	146	165	Right-handed alpha
Helix 2	AA2	A	185	192	Right-handed alpha
Helix 3	AA3	A	194	200	Right-handed alpha
Helix 4	AA4	A	210	221	Right-handed alpha
Helix 5	AA5	A	224	228	Right-handed 310
Helix 6	AA6	A	255	262	Right-handed alpha
Helix 7	AA7	A	277	288	Right-handed alpha
Helix 8	AA8	A	303	311	Right-handed alpha
Helix 9	AA9	A	354	359	Right-handed alpha
Helix 10	AB1	A	409	413	Right-handed 310
Helix 11	AB2	A	529	534	Right-handed alpha
Helix 12	AB3	A	558	562	Right-handed alpha
Helix 13	AB4	B	10	18	Right-handed alpha
Helix 14	AB5	B	35	40	Right-handed 310
Helix 15	AB6	B	43	48	Right-handed alpha
Helix 16	AB7	B	114	118	Right-handed 310
Helix 17	AB8	B	120	139	Right-handed alpha
Helix 18	AB9	B	191	202	Right-handed alpha
Helix 19	AC1	B	213	224	Right-handed alpha
Helix 20	AC2	B	224	229	Right-handed alpha
Helix 21	AC3	B	249	255	Right-handed 310
Helix 22	AC4	B	273	277	Right-handed 310
Helix 23	AC5	B	281	293	Right-handed alpha
Helix 24	AC6	B	304	315	Right-handed alpha
Helix 25	AC7	B	327	341	Right-handed alpha
Helix 26	AC8	B	436	440	Right-handed 310

There are 15 sheets in PDB entry 9T5W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	593	598	anti-parallel
Strand 3	A	585	590	anti-parallel
Strand 4	A	572	576	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	24	first strand
Strand 2	A	29	33	anti-parallel
Strand 3	A	47	51	anti-parallel
Strand 4	A	57	59	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	80	first strand
Strand 2	A	85	96	anti-parallel
Strand 3	A	101	110	anti-parallel
Strand 4	A	119	120	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	184	first strand
Strand 2	A	170	176	anti-parallel
Strand 3	A	133	140	parallel
Strand 4	A	234	241	parallel
Strand 5	A	264	270	parallel
Strand 6	A	296	298	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	343	first strand
Strand 2	A	348	352	anti-parallel
Strand 3	A	361	365	anti-parallel
Strand 4	A	371	374	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	396	first strand
Strand 2	A	401	407	anti-parallel
Strand 3	A	415	422	anti-parallel
Strand 4	A	425	433	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	448	first strand
Strand 2	A	458	467	anti-parallel
Strand 3	A	472	479	anti-parallel
Strand 4	A	492	495	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	509	513	first strand
Strand 2	A	522	527	anti-parallel
Strand 3	A	536	540	anti-parallel
Strand 4	A	554	557	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	543	first strand
Strand 2	A	547	548	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	675	676	first strand
Strand 2	A	695	702	anti-parallel
Strand 3	A	634	644	anti-parallel
Strand 4	A	602	611	anti-parallel
Strand 5	A	736	737	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	683	690	first strand
Strand 2	A	657	665	anti-parallel
Strand 3	A	714	724	anti-parallel
Strand 4	A	745	749	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	22	first strand
Strand 2	B	41	42	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	77	first strand
Strand 2	B	91	97	anti-parallel
Strand 3	B	387	394	anti-parallel
Strand 4	B	357	363	anti-parallel
Strand 5	B	369	373	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	82	first strand
Strand 2	B	414	419	parallel
Strand 3	B	402	408	anti-parallel
Strand 4	B	343	349	anti-parallel
Strand 5	B	376	381	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	189	first strand
Strand 2	B	142	146	anti-parallel
Strand 3	B	105	111	parallel
Strand 4	B	234	241	parallel
Strand 5	B	294	300	parallel
Strand 6	B	319	322	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9T5W

Analysis of interatomic Contacts of Structural Units in PDB entry:
9T5W