Analysis of interatomic Contacts of Structural Units in PDB entry:
9T5Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9T5Z entry

There are 4 chains in PDB entry 9T5Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	PHE 750
B	THR 60	CYS 423
H	GLU 1	CYS 218
L	ASP 1	CYS 214

There are 18 helices in PDB entry 9T5Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	354	359	Right-handed alpha
Helix 2	AA2	A	409	413	Right-handed 310
Helix 3	AA3	A	528	533	Right-handed alpha
Helix 4	AA4	B	114	119	Right-handed 310
Helix 5	AA5	B	120	139	Right-handed alpha
Helix 6	AA6	B	191	202	Right-handed alpha
Helix 7	AA7	B	213	223	Right-handed alpha
Helix 8	AA8	B	224	229	Right-handed alpha
Helix 9	AA9	B	249	255	Right-handed 310
Helix 10	AB1	B	271	277	Right-handed 310
Helix 11	AB2	B	281	293	Right-handed alpha
Helix 12	AB3	B	304	313	Right-handed alpha
Helix 13	AB4	B	327	339	Right-handed alpha
Helix 14	AB5	H	86	90	Right-handed 310
Helix 15	AB6	H	203	206	Right-handed 310
Helix 16	AB7	L	121	127	Right-handed alpha
Helix 17	AB8	L	183	189	Right-handed alpha
Helix 18	AB9	L	212	214	Right-handed 310

There are 24 sheets in PDB entry 9T5Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	592	597	anti-parallel
Strand 3	A	584	589	anti-parallel
Strand 4	A	571	573	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	24	first strand
Strand 2	A	29	33	anti-parallel
Strand 3	A	47	51	anti-parallel
Strand 4	A	57	59	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	43	44	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	80	first strand
Strand 2	A	85	96	anti-parallel
Strand 3	A	101	110	anti-parallel
Strand 4	A	119	120	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	343	first strand
Strand 2	A	348	351	anti-parallel
Strand 3	A	362	365	anti-parallel
Strand 4	A	371	374	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	396	first strand
Strand 2	A	401	407	anti-parallel
Strand 3	A	415	422	anti-parallel
Strand 4	A	425	433	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	448	first strand
Strand 2	A	458	467	anti-parallel
Strand 3	A	472	479	anti-parallel
Strand 4	A	491	493	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	512	first strand
Strand 2	A	521	525	anti-parallel
Strand 3	A	535	539	anti-parallel
Strand 4	A	553	556	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	542	first strand
Strand 2	A	546	547	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	694	698	first strand
Strand 2	A	635	643	anti-parallel
Strand 3	A	601	609	anti-parallel
Strand 4	A	735	736	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	629	630	first strand
Strand 2	A	700	703	anti-parallel
Strand 3	A	674	675	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	683	689	first strand
Strand 2	A	656	664	anti-parallel
Strand 3	A	713	723	anti-parallel
Strand 4	A	744	748	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	66	first strand
Strand 2	B	80	84	anti-parallel
Strand 3	B	414	420	parallel
Strand 4	B	402	408	anti-parallel
Strand 5	B	344	349	anti-parallel
Strand 6	B	376	379	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	77	first strand
Strand 2	B	90	97	anti-parallel
Strand 3	B	387	395	anti-parallel
Strand 4	B	356	363	anti-parallel
Strand 5	B	369	373	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	189	first strand
Strand 2	B	142	149	anti-parallel
Strand 3	B	105	112	parallel
Strand 4	B	234	241	parallel
Strand 5	B	294	300	parallel
Strand 6	B	320	322	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	110	114	parallel
Strand 3	H	91	98	anti-parallel
Strand 4	H	33	40	anti-parallel
Strand 5	H	44	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	123	127	first strand
Strand 2	H	138	148	anti-parallel
Strand 3	H	177	187	anti-parallel
Strand 4	H	166	168	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	123	127	first strand
Strand 2	H	138	148	anti-parallel
Strand 3	H	177	187	anti-parallel
Strand 4	H	172	174	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	154	157	first strand
Strand 2	H	197	202	anti-parallel
Strand 3	H	207	212	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	12	first strand
Strand 2	L	102	105	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	155	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	198	anti-parallel
Strand 4	L	201	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9T5Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
9T5Z