Analysis of interatomic Contacts of Structural Units in PDB entry:
9T62


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9T62 entry

There are 2 chains in PDB entry 9T62 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 3ALA 305
B
 HIS 3ALA 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 9T62. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 11Right-handed 310
Helix 2
AA2
A
12 29Right-handed alpha
Helix 3
AA3
A
30 49Right-handed alpha
Helix 4
AA4
A
62 82Right-handed alpha
Helix 5
AA5
A
100 104Right-handed 310
Helix 6
AA6
A
125 129Right-handed 310
Helix 7
AA7
A
171 180Right-handed alpha
Helix 8
AA8
A
201 208Right-handed alpha
Helix 9
AA9
A
221 230Right-handed alpha
Helix 10
AB1
A
231 235Right-handed 310
Helix 11
AB2
A
237 241Right-handed 310
Helix 12
AB3
A
242 262Right-handed alpha
Helix 13
AB4
A
292 296Right-handed 310
Helix 14
AB5
A
297 301Right-handed 310
Helix 15
AB6
B
7 11Right-handed 310
Helix 16
AB7
B
12 29Right-handed alpha
Helix 17
AB8
B
30 49Right-handed alpha
Helix 18
AB9
B
62 82Right-handed alpha
Helix 19
AC1
B
100 104Right-handed 310
Helix 20
AC2
B
125 129Right-handed 310
Helix 21
AC3
B
171 181Right-handed alpha
Helix 22
AC4
B
201 208Right-handed alpha
Helix 23
AC5
B
221 230Right-handed alpha
Helix 24
AC6
B
231 235Right-handed 310
Helix 25
AC7
B
237 241Right-handed 310
Helix 26
AC8
B
242 262Right-handed alpha
Helix 27
AC9
B
292 296Right-handed 310
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There are 4 sheets in PDB entry 9T62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
303 305parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 138first strand
Strand 2
A
150 152anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
303 304parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 137first strand
Strand 2
B
151 152anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il