Analysis of interatomic Contacts of Structural Units in PDB entry:
9T6J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9T6J entry

There are 2 chains in PDB entry 9T6J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 23	LYS 670
C	LEU 679	LEU 1309

There are 67 helices in PDB entry 9T6J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	88	92	Right-handed 310
Helix 2	AA2	A	239	243	Right-handed 310
Helix 3	AA3	A	302	307	Right-handed alpha
Helix 4	AA4	A	308	311	Right-handed 310
Helix 5	AA5	A	443	447	Right-handed 310
Helix 6	AA6	A	492	496	Right-handed 310
Helix 7	AA7	A	531	535	Right-handed 310
Helix 8	AA8	A	608	610	Right-handed 310
Helix 9	AA9	A	618	628	Right-handed alpha
Helix 10	AB1	A	629	631	Right-handed 310
Helix 11	AB2	A	641	648	Right-handed alpha
Helix 12	AB3	C	680	688	Right-handed alpha
Helix 13	AB4	C	692	703	Right-handed alpha
Helix 14	AB5	C	710	716	Right-handed alpha
Helix 15	AB6	C	721	743	Right-handed alpha
Helix 16	AB7	C	984	992	Right-handed alpha
Helix 17	AB8	C	1007	1014	Right-handed alpha
Helix 18	AB9	C	1015	1028	Right-handed alpha
Helix 19	AC1	C	1030	1034	Right-handed 310
Helix 20	AC2	C	1037	1056	Right-handed alpha
Helix 21	AC3	C	1057	1060	Right-handed 310
Helix 22	AC4	C	1075	1090	Right-handed alpha
Helix 23	AC5	C	1096	1112	Right-handed alpha
Helix 24	AC6	C	1132	1155	Right-handed alpha
Helix 25	AC7	C	1161	1180	Right-handed alpha
Helix 26	AC8	C	1184	1197	Right-handed alpha
Helix 27	AC9	C	1202	1215	Right-handed alpha
Helix 28	AD1	C	1234	1238	Right-handed 310
Helix 29	AD2	C	1244	1261	Right-handed alpha
Helix 30	AD3	C	1263	1278	Right-handed alpha
Helix 31	AD4	C	1287	1304	Right-handed alpha
Helix 32	AD5	C	1435	1442	Right-handed alpha
Helix 33	AD6	C	1524	1529	Right-handed alpha
Helix 34	AD7	C	1544	1553	Right-handed alpha
Helix 35	AD8	C	1656	1674	Right-handed alpha
Helix 36	AD9	B	88	92	Right-handed 310
Helix 37	AE1	B	239	243	Right-handed 310
Helix 38	AE2	B	302	307	Right-handed alpha
Helix 39	AE3	B	308	311	Right-handed 310
Helix 40	AE4	B	443	447	Right-handed 310
Helix 41	AE5	B	492	496	Right-handed 310
Helix 42	AE6	B	531	535	Right-handed 310
Helix 43	AE7	B	609	614	Right-handed alpha
Helix 44	AE8	B	618	628	Right-handed alpha
Helix 45	AE9	B	629	631	Right-handed 310
Helix 46	AF1	B	641	648	Right-handed alpha
Helix 47	AF2	D	680	688	Right-handed alpha
Helix 48	AF3	D	692	703	Right-handed alpha
Helix 49	AF4	D	710	717	Right-handed alpha
Helix 50	AF5	D	721	743	Right-handed alpha
Helix 51	AF6	D	984	992	Right-handed alpha
Helix 52	AF7	D	1007	1014	Right-handed alpha
Helix 53	AF8	D	1015	1028	Right-handed alpha
Helix 54	AF9	D	1030	1034	Right-handed 310
Helix 55	AG1	D	1037	1056	Right-handed alpha
Helix 56	AG2	D	1057	1060	Right-handed 310
Helix 57	AG3	D	1075	1090	Right-handed alpha
Helix 58	AG4	D	1096	1112	Right-handed alpha
Helix 59	AG5	D	1132	1155	Right-handed alpha
Helix 60	AG6	D	1161	1180	Right-handed alpha
Helix 61	AG7	D	1184	1197	Right-handed alpha
Helix 62	AG8	D	1202	1215	Right-handed alpha
Helix 63	AG9	D	1234	1238	Right-handed 310
Helix 64	AH1	D	1244	1261	Right-handed alpha
Helix 65	AH2	D	1263	1278	Right-handed alpha
Helix 66	AH3	D	1287	1304	Right-handed alpha
Helix 67	AH4	D	1435	1442	Right-handed alpha

There are 48 sheets in PDB entry 9T6J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	85	first strand
Strand 2	A	37	42	anti-parallel
Strand 3	A	24	28	anti-parallel
Strand 4	A	651	655	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	112	120	parallel
Strand 3	A	101	108	anti-parallel
Strand 4	A	50	58	anti-parallel
Strand 5	A	65	73	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	130	first strand
Strand 2	A	143	148	anti-parallel
Strand 3	A	182	184	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	135	first strand
Strand 2	A	212	219	parallel
Strand 3	A	197	205	anti-parallel
Strand 4	A	159	164	anti-parallel
Strand 5	A	170	176	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	141	first strand
Strand 2	A	188	189	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	C	764	765	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	233	first strand
Strand 2	A	246	253	anti-parallel
Strand 3	A	296	301	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	238	first strand
Strand 2	A	337	347	parallel
Strand 3	A	322	331	anti-parallel
Strand 4	A	262	272	anti-parallel
Strand 5	A	281	293	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	356	first strand
Strand 2	A	369	377	anti-parallel
Strand 3	A	417	422	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	403	first strand
Strand 2	A	387	396	anti-parallel
Strand 3	A	407	410	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	403	first strand
Strand 2	A	387	396	anti-parallel
Strand 3	A	428	437	anti-parallel
Strand 4	A	449	455	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	469	first strand
Strand 2	A	481	489	anti-parallel
Strand 3	A	524	529	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	516	first strand
Strand 2	A	498	505	anti-parallel
Strand 3	A	537	547	anti-parallel
Strand 4	A	552	562	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	572	574	first strand
Strand 2	A	587	593	anti-parallel
Strand 3	C	783	789	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	777	780	first strand
Strand 2	A	598	606	anti-parallel
Strand 3	C	796	805	anti-parallel
Strand 4	C	808	811	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	777	780	first strand
Strand 2	A	598	606	anti-parallel
Strand 3	C	796	805	anti-parallel
Strand 4	C	815	818	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	823	828	first strand
Strand 2	C	838	847	anti-parallel
Strand 3	C	892	902	anti-parallel
Strand 4	C	865	866	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	823	828	first strand
Strand 2	C	838	847	anti-parallel
Strand 3	C	1485	1486	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	833	834	first strand
Strand 2	C	920	930	parallel
Strand 3	C	906	915	anti-parallel
Strand 4	C	853	859	anti-parallel
Strand 5	C	886	888	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	934	944	first strand
Strand 2	C	1357	1367	anti-parallel
Strand 3	C	974	981	anti-parallel
Strand 4	C	1338	1339	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	956	959	first strand
Strand 2	C	1346	1350	anti-parallel
Strand 3	C	1310	1317	anti-parallel
Strand 4	C	1322	1329	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1217	1219	first strand
Strand 2	C	1225	1227	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1377	1384	first strand
Strand 2	C	1401	1408	anti-parallel
Strand 3	C	1473	1481	anti-parallel
Strand 4	C	1432	1434	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1452	1456	first strand
Strand 2	C	1459	1464	anti-parallel
Strand 3	C	1422	1427	anti-parallel
Strand 4	C	1491	1497	anti-parallel
Strand 5	C	1504	1509	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1534	1535	first strand
Strand 2	C	1644	1648	parallel
Strand 3	C	1616	1620	anti-parallel
Strand 4	C	1560	1571	anti-parallel
Strand 5	C	1574	1586	anti-parallel
Strand 6	C	1597	1603	anti-parallel
Strand 7	C	1632	1638	parallel
Strand 8	C	1625	1629	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	85	first strand
Strand 2	B	37	42	anti-parallel
Strand 3	B	24	28	anti-parallel
Strand 4	B	651	655	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	32	first strand
Strand 2	B	112	120	parallel
Strand 3	B	101	108	anti-parallel
Strand 4	B	50	58	anti-parallel
Strand 5	B	65	73	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	130	first strand
Strand 2	B	143	148	anti-parallel
Strand 3	B	182	184	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	135	first strand
Strand 2	B	212	219	parallel
Strand 3	B	197	205	anti-parallel
Strand 4	B	159	164	anti-parallel
Strand 5	B	170	176	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	141	first strand
Strand 2	B	188	189	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	D	764	765	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	233	first strand
Strand 2	B	246	253	anti-parallel
Strand 3	B	296	301	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	238	first strand
Strand 2	B	337	347	parallel
Strand 3	B	322	331	anti-parallel
Strand 4	B	262	272	anti-parallel
Strand 5	B	280	293	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	356	first strand
Strand 2	B	369	377	anti-parallel
Strand 3	B	417	422	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	403	first strand
Strand 2	B	387	396	anti-parallel
Strand 3	B	407	410	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	403	first strand
Strand 2	B	387	396	anti-parallel
Strand 3	B	428	437	anti-parallel
Strand 4	B	449	455	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	469	first strand
Strand 2	B	481	489	anti-parallel
Strand 3	B	524	529	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	516	first strand
Strand 2	B	498	505	anti-parallel
Strand 3	B	537	547	anti-parallel
Strand 4	B	552	562	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	572	576	first strand
Strand 2	B	587	606	anti-parallel
Strand 3	D	796	805	anti-parallel
Strand 4	D	808	811	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	777	789	first strand
Strand 2	B	587	606	anti-parallel
Strand 3	D	796	805	anti-parallel
Strand 4	D	815	818	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	823	828	first strand
Strand 2	D	838	847	anti-parallel
Strand 3	D	892	902	anti-parallel
Strand 4	D	865	867	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	823	828	first strand
Strand 2	D	838	847	anti-parallel
Strand 3	D	1485	1486	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	833	834	first strand
Strand 2	D	920	930	parallel
Strand 3	D	907	916	anti-parallel
Strand 4	D	853	859	anti-parallel
Strand 5	D	886	888	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	934	944	first strand
Strand 2	D	1357	1367	anti-parallel
Strand 3	D	974	981	anti-parallel
Strand 4	D	1338	1339	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	956	959	first strand
Strand 2	D	1346	1350	anti-parallel
Strand 3	D	1310	1317	anti-parallel
Strand 4	D	1322	1329	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1217	1219	first strand
Strand 2	D	1225	1227	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1377	1384	first strand
Strand 2	D	1401	1408	anti-parallel
Strand 3	D	1473	1481	anti-parallel
Strand 4	D	1432	1434	anti-parallel

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There are 5 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1452	1456	first strand
Strand 2	D	1459	1464	anti-parallel
Strand 3	D	1422	1427	anti-parallel
Strand 4	D	1491	1497	anti-parallel
Strand 5	D	1504	1509	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9T6J

Analysis of interatomic Contacts of Structural Units in PDB entry:
9T6J