Analysis of interatomic Contacts of Structural Units in PDB entry:
9T7V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9T7V entry

There are 9 chains in PDB entry 9T7V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 7	THR 189
R	ASP 27	LYS 113
U	MET 1	GLY 75
O	GLY 9	ASP 111
N	MET 1	LEU 73
C	SER 12	ARG 768
H	ASP 37	PHE 490
I	MET 1	PRO 97
B	LEU 46	SER 336

There are 76 helices in PDB entry 9T7V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	23	Right-handed alpha
Helix 2	AA2	A	29	40	Right-handed alpha
Helix 3	AA3	A	65	69	Right-handed 310
Helix 4	AA4	R	62	67	Right-handed alpha
Helix 5	AA5	R	87	91	Right-handed 310
Helix 6	AA6	U	23	35	Right-handed alpha
Helix 7	AA7	U	37	41	Right-handed 310
Helix 8	AA8	U	56	60	Right-handed 310
Helix 9	AA9	O	33	37	Right-handed alpha
Helix 10	AB1	O	39	46	Right-handed alpha
Helix 11	AB2	O	47	51	Right-handed 310
Helix 12	AB3	O	66	83	Right-handed alpha
Helix 13	AB4	O	99	110	Right-handed alpha
Helix 14	AB5	N	22	34	Right-handed alpha
Helix 15	AB6	C	18	31	Right-handed alpha
Helix 16	AB7	C	36	52	Right-handed alpha
Helix 17	AB8	C	56	81	Right-handed alpha
Helix 18	AB9	C	85	103	Right-handed alpha
Helix 19	AC1	C	104	106	Right-handed 310
Helix 20	AC2	C	112	118	Right-handed alpha
Helix 21	AC3	C	134	147	Right-handed alpha
Helix 22	AC4	C	147	169	Right-handed alpha
Helix 23	AC5	C	174	188	Right-handed alpha
Helix 24	AC6	C	202	225	Right-handed alpha
Helix 25	AC7	C	226	249	Right-handed alpha
Helix 26	AC8	C	257	270	Right-handed alpha
Helix 27	AC9	C	273	279	Right-handed alpha
Helix 28	AD1	C	280	286	Right-handed alpha
Helix 29	AD2	C	291	301	Right-handed alpha
Helix 30	AD3	C	307	329	Right-handed alpha
Helix 31	AD4	C	336	360	Right-handed alpha
Helix 32	AD5	C	362	378	Right-handed alpha
Helix 33	AD6	C	403	417	Right-handed alpha
Helix 34	AD7	C	419	424	Right-handed alpha
Helix 35	AD8	C	426	441	Right-handed alpha
Helix 36	AD9	C	442	444	Right-handed 310
Helix 37	AE1	C	446	465	Right-handed alpha
Helix 38	AE2	C	469	484	Right-handed alpha
Helix 39	AE3	C	486	514	Right-handed alpha
Helix 40	AE4	C	522	524	Right-handed 310
Helix 41	AE5	C	533	537	Right-handed alpha
Helix 42	AE6	C	548	563	Right-handed alpha
Helix 43	AE7	C	597	604	Right-handed alpha
Helix 44	AE8	C	605	607	Right-handed 310
Helix 45	AE9	C	616	624	Right-handed alpha
Helix 46	AF1	C	626	639	Right-handed alpha
Helix 47	AF2	C	656	660	Right-handed 310
Helix 48	AF3	C	700	718	Right-handed alpha
Helix 49	AF4	C	720	722	Right-handed 310
Helix 50	AF5	C	733	743	Right-handed alpha
Helix 51	AF6	C	749	763	Right-handed alpha
Helix 52	AF7	H	41	45	Right-handed 310
Helix 53	AF8	H	65	79	Right-handed alpha
Helix 54	AF9	H	92	98	Right-handed alpha
Helix 55	AG1	H	210	214	Right-handed alpha
Helix 56	AG2	H	271	283	Right-handed alpha
Helix 57	AG3	H	285	293	Right-handed alpha
Helix 58	AG4	H	329	334	Right-handed alpha
Helix 59	AG5	H	340	346	Right-handed alpha
Helix 60	AG6	H	348	353	Right-handed alpha
Helix 61	AG7	H	359	381	Right-handed alpha
Helix 62	AG8	H	381	398	Right-handed alpha
Helix 63	AG9	H	403	407	Right-handed 310
Helix 64	AH1	H	408	426	Right-handed alpha
Helix 65	AH2	H	427	433	Right-handed alpha
Helix 66	AH3	H	437	463	Right-handed alpha
Helix 67	AH4	H	468	486	Right-handed alpha
Helix 68	AH5	I	23	36	Right-handed alpha
Helix 69	AH6	I	57	61	Right-handed 310
Helix 70	AH7	B	137	142	Right-handed 310
Helix 71	AH8	B	159	165	Right-handed 310
Helix 72	AH9	B	182	188	Right-handed 310
Helix 73	AI1	B	205	211	Right-handed 310
Helix 74	AI2	B	230	234	Right-handed 310
Helix 75	AI3	B	261	274	Right-handed alpha
Helix 76	AI4	B	283	292	Right-handed alpha

There are 16 sheets in PDB entry 9T7V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	133	first strand
Strand 2	A	92	99	anti-parallel
Strand 3	A	151	158	anti-parallel
Strand 4	A	71	77	anti-parallel
Strand 5	A	61	64	anti-parallel
Strand 6	A	183	184	parallel
Strand 7	A	187	188	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	125	first strand
Strand 2	A	102	107	anti-parallel
Strand 3	A	139	143	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	167	first strand
Strand 2	A	174	177	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	526	532	first strand
Strand 2	R	31	43	parallel
Strand 3	C	569	573	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	526	532	first strand
Strand 2	R	31	43	parallel
Strand 3	C	579	585	anti-parallel
Strand 4	C	590	596	anti-parallel
Strand 5	C	683	687	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	83	85	first strand
Strand 2	R	75	78	anti-parallel
Strand 3	R	108	111	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	12	16	first strand
Strand 2	U	2	6	anti-parallel
Strand 3	U	66	73	parallel
Strand 4	U	42	44	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	12	16	first strand
Strand 2	U	2	6	anti-parallel
Strand 3	U	66	73	parallel
Strand 4	H	303	306	parallel
Strand 5	H	295	296	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	59	61	first strand
Strand 2	O	18	22	parallel
Strand 3	O	28	32	anti-parallel
Strand 4	I	12	19	parallel
Strand 5	I	2	9	anti-parallel
Strand 6	I	73	74	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	12	16	first strand
Strand 2	N	2	6	anti-parallel
Strand 3	N	66	70	parallel
Strand 4	N	42	44	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	614	615	first strand
Strand 2	C	665	668	anti-parallel
Strand 3	C	648	650	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	61	63	first strand
Strand 2	H	237	239	anti-parallel
Strand 3	H	225	226	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	246	247	first strand
Strand 2	H	256	257	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	313	314	first strand
Strand 2	H	321	322	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	52	first strand
Strand 2	B	72	76	parallel
Strand 3	B	95	99	parallel
Strand 4	B	124	126	parallel
Strand 5	B	147	149	parallel
Strand 6	B	171	172	parallel
Strand 7	B	194	195	parallel
Strand 8	B	216	218	parallel
Strand 9	B	239	241	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	228	first strand
Strand 2	B	324	330	parallel
Strand 3	B	310	316	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9T7V

Analysis of interatomic Contacts of Structural Units in PDB entry:
9T7V