Analysis of interatomic Contacts of Structural Units in PDB entry:
9T8C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9T8C entry

There are 5 chains in PDB entry 9T8C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	TYR 32	CYS 400
A	THR 2	TYR 226
B	GLU 2	SER 342
C	ALA 7	GLU 63
S	ASP 2	LEU 248

There are 28 helices in PDB entry 9T8C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	32	57	Right-handed alpha
Helix 2	AA2	R	58	61	Right-handed 310
Helix 3	AA3	R	62	93	Right-handed alpha
Helix 4	AA4	R	99	134	Right-handed alpha
Helix 5	AA5	R	134	139	Right-handed alpha
Helix 6	AA6	R	145	170	Right-handed alpha
Helix 7	AA7	R	187	197	Right-handed alpha
Helix 8	AA8	R	197	223	Right-handed alpha
Helix 9	AA9	R	324	355	Right-handed alpha
Helix 10	AB1	R	361	385	Right-handed alpha
Helix 11	AB2	R	387	399	Right-handed alpha
Helix 12	AB3	A	4	29	Right-handed alpha
Helix 13	AB4	A	43	47	Right-handed 310
Helix 14	AB5	A	90	99	Right-handed 310
Helix 15	AB6	A	115	128	Right-handed alpha
Helix 16	AB7	A	143	154	Right-handed alpha
Helix 17	AB8	A	155	159	Right-handed 310
Helix 18	AB9	A	168	183	Right-handed alpha
Helix 19	AC1	A	202	223	Right-handed alpha
Helix 20	AC2	B	3	25	Right-handed alpha
Helix 21	AC3	B	28	33	Right-handed alpha
Helix 22	AC4	C	8	24	Right-handed alpha
Helix 23	AC5	C	29	44	Right-handed alpha
Helix 24	AC6	C	45	48	Right-handed 310
Helix 25	AC7	C	55	59	Right-handed 310
Helix 26	AC8	S	54	57	Right-handed 310
Helix 27	AC9	S	88	92	Right-handed 310
Helix 28	AD1	S	221	225	Right-handed 310

There are 12 sheets in PDB entry 9T8C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	68	74	anti-parallel
Strand 3	A	77	83	anti-parallel
Strand 4	A	31	38	parallel
Strand 5	A	103	109	parallel
Strand 6	A	136	142	parallel
Strand 7	A	194	195	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	51	first strand
Strand 2	B	334	340	anti-parallel
Strand 3	B	326	330	anti-parallel
Strand 4	B	314	319	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	62	first strand
Strand 2	B	68	73	anti-parallel
Strand 3	B	77	82	anti-parallel
Strand 4	B	87	93	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	104	first strand
Strand 2	B	110	115	anti-parallel
Strand 3	B	119	124	anti-parallel
Strand 4	B	133	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	152	first strand
Strand 2	B	155	160	anti-parallel
Strand 3	B	164	169	anti-parallel
Strand 4	B	174	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	191	first strand
Strand 2	B	197	202	anti-parallel
Strand 3	B	207	211	anti-parallel
Strand 4	B	217	221	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	233	first strand
Strand 2	B	239	244	anti-parallel
Strand 3	B	249	253	anti-parallel
Strand 4	B	258	263	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	277	first strand
Strand 2	B	283	288	anti-parallel
Strand 3	B	293	297	anti-parallel
Strand 4	B	303	307	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	4	8	first strand
Strand 2	S	18	26	anti-parallel
Strand 3	S	79	85	anti-parallel
Strand 4	S	69	74	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	11	13	first strand
Strand 2	S	116	120	parallel
Strand 3	S	93	100	anti-parallel
Strand 4	S	34	40	anti-parallel
Strand 5	S	46	52	anti-parallel
Strand 6	S	59	61	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	141	142	first strand
Strand 2	S	156	162	anti-parallel
Strand 3	S	212	217	anti-parallel
Strand 4	S	204	206	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	187	190	first strand
Strand 2	S	175	180	anti-parallel
Strand 3	S	227	232	anti-parallel
Strand 4	S	244	245	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9T8C

Analysis of interatomic Contacts of Structural Units in PDB entry:
9T8C