Analysis of interatomic Contacts of Structural Units in PDB entry:
9T95


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9T95 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 9T95 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 186LEU 547
B
 SER 342ASP 343
B
 GLY 345ILE 346
B
 LEU 348LEU 348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 9T95. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
187 200Right-handed alpha
Helix 2
AA2
A
200 211Right-handed alpha
Helix 3
AA3
A
212 216Right-handed 310
Helix 4
AA4
A
228 253Right-handed alpha
Helix 5
AA5
A
497 502Right-handed alpha
Helix 6
AA6
A
506 509Right-handed 310
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There are 7 sheets in PDB entry 9T95. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 261first strand
Strand 2
A
540 545anti-parallel
Strand 3
A
531 536anti-parallel
Strand 4
A
522 527anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 275first strand
Strand 2
A
279 284anti-parallel
Strand 3
A
289 293anti-parallel
Strand 4
A
299 303anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 315first strand
Strand 2
A
319 324anti-parallel
Strand 3
A
328 333anti-parallel
Strand 4
A
339 344anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 356first strand
Strand 2
A
359 364anti-parallel
Strand 3
A
369 374anti-parallel
Strand 4
A
380 386anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 398first strand
Strand 2
A
402 407anti-parallel
Strand 3
A
412 416anti-parallel
Strand 4
A
422 426anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 439first strand
Strand 2
A
442 447anti-parallel
Strand 3
A
452 456anti-parallel
Strand 4
A
462 466anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 478first strand
Strand 2
A
482 487anti-parallel
Strand 3
A
491 496anti-parallel
Strand 4
A
511 516anti-parallel
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