Analysis of interatomic Contacts of Structural Units in PDB entry:
9TAJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9TAJ entry

There are 13 chains in PDB entry 9TAJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	ALA 11	LYS 166
F	ILE 4	LYS 442
G	ALA 4	ALA 908
I	GLU 36	PRO 180
B	ASP 2	ILE 220
C	GLU 12	ARG 600
H	ILE 4	GLN 325
J	MET 1	GLU 162
K	MET 1	GLY 100
M	MET 1	VAL 504
A	SER 6	THR 126
L	MET 1	ARG 613
N	MET 1	MET 485

There are221 helices in PDB entry 9TAJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	15	26	Right-handed alpha
Helix 2	AA2	E	27	29	Right-handed 310
Helix 3	AA3	E	31	34	Right-handed 310
Helix 4	AA4	E	35	48	Right-handed alpha
Helix 5	AA5	E	51	53	Right-handed 310
Helix 6	AA6	E	54	63	Right-handed alpha
Helix 7	AA7	E	65	76	Right-handed alpha
Helix 8	AA8	E	94	101	Right-handed alpha
Helix 9	AA9	E	101	113	Right-handed alpha
Helix 10	AB1	E	136	140	Right-handed 310
Helix 11	AB2	E	154	156	Right-handed 310
Helix 12	AB3	E	157	162	Right-handed alpha
Helix 13	AB4	E	163	165	Right-handed 310
Helix 14	AB5	F	25	32	Right-handed alpha
Helix 15	AB6	F	35	43	Right-handed alpha
Helix 16	AB7	F	46	58	Right-handed alpha
Helix 17	AB8	F	68	75	Right-handed alpha
Helix 18	AB9	F	99	108	Right-handed alpha
Helix 19	AC1	F	108	124	Right-handed alpha
Helix 20	AC2	F	136	153	Right-handed alpha
Helix 21	AC3	F	177	181	Right-handed 310
Helix 22	AC4	F	182	191	Right-handed alpha
Helix 23	AC5	F	208	212	Right-handed 310
Helix 24	AC6	F	219	232	Right-handed alpha
Helix 25	AC7	F	232	238	Right-handed alpha
Helix 26	AC8	F	269	277	Right-handed alpha
Helix 27	AC9	F	301	305	Right-handed 310
Helix 28	AD1	F	310	317	Right-handed alpha
Helix 29	AD2	F	334	349	Right-handed alpha
Helix 30	AD3	F	354	373	Right-handed alpha
Helix 31	AD4	F	379	391	Right-handed alpha
Helix 32	AD5	F	399	405	Right-handed alpha
Helix 33	AD6	F	405	415	Right-handed alpha
Helix 34	AD7	F	415	421	Right-handed alpha
Helix 35	AD8	G	20	28	Right-handed alpha
Helix 36	AD9	G	83	99	Right-handed alpha
Helix 37	AE1	G	104	108	Right-handed 310
Helix 38	AE2	G	114	124	Right-handed alpha
Helix 39	AE3	G	150	153	Right-handed 310
Helix 40	AE4	G	157	164	Right-handed alpha
Helix 41	AE5	G	177	181	Right-handed 310
Helix 42	AE6	G	195	197	Right-handed 310
Helix 43	AE7	G	198	203	Right-handed alpha
Helix 44	AE8	G	211	216	Right-handed alpha
Helix 45	AE9	G	219	223	Right-handed 310
Helix 46	AF1	G	265	271	Right-handed alpha
Helix 47	AF2	G	272	277	Right-handed 310
Helix 48	AF3	G	296	309	Right-handed alpha
Helix 49	AF4	G	323	335	Right-handed alpha
Helix 50	AF5	G	344	361	Right-handed alpha
Helix 51	AF6	G	368	374	Right-handed 310
Helix 52	AF7	G	383	388	Right-handed alpha
Helix 53	AF8	G	388	400	Right-handed alpha
Helix 54	AF9	G	400	410	Right-handed alpha
Helix 55	AG1	G	416	425	Right-handed alpha
Helix 56	AG2	G	452	468	Right-handed alpha
Helix 57	AG3	G	478	494	Right-handed alpha
Helix 58	AG4	G	508	525	Right-handed alpha
Helix 59	AG5	G	539	547	Right-handed alpha
Helix 60	AG6	G	550	560	Right-handed alpha
Helix 61	AG7	G	578	587	Right-handed alpha
Helix 62	AG8	G	614	618	Right-handed 310
Helix 63	AG9	G	649	664	Right-handed alpha
Helix 64	AH1	G	670	682	Right-handed alpha
Helix 65	AH2	G	683	691	Right-handed 310
Helix 66	AH3	G	763	771	Right-handed 310
Helix 67	AH4	G	826	831	Right-handed 310
Helix 68	AH5	G	832	837	Right-handed alpha
Helix 69	AH6	G	845	853	Right-handed alpha
Helix 70	AH7	G	894	898	Right-handed 310
Helix 71	AH8	I	64	70	Right-handed alpha
Helix 72	AH9	I	103	108	Right-handed alpha
Helix 73	AI1	I	126	129	Right-handed 310
Helix 74	AI2	I	133	137	Right-handed 310
Helix 75	AI3	I	149	153	Right-handed 310
Helix 76	AI4	B	37	52	Right-handed alpha
Helix 77	AI5	B	62	70	Right-handed alpha
Helix 78	AI6	B	89	93	Right-handed 310
Helix 79	AI7	B	106	117	Right-handed alpha
Helix 80	AI8	B	127	133	Right-handed alpha
Helix 81	AI9	B	144	148	Right-handed 310
Helix 82	AJ1	B	161	178	Right-handed alpha
Helix 83	AJ2	B	199	204	Right-handed alpha
Helix 84	AJ3	B	204	210	Right-handed alpha
Helix 85	AJ4	C	23	34	Right-handed alpha
Helix 86	AJ5	C	56	66	Right-handed alpha
Helix 87	AJ6	C	133	146	Right-handed alpha
Helix 88	AJ7	C	181	195	Right-handed alpha
Helix 89	AJ8	C	201	205	Right-handed 310
Helix 90	AJ9	C	211	215	Right-handed 310
Helix 91	AK1	C	224	228	Right-handed 310
Helix 92	AK2	C	255	261	Right-handed alpha
Helix 93	AK3	C	268	274	Right-handed alpha
Helix 94	AK4	C	280	296	Right-handed alpha
Helix 95	AK5	C	300	331	Right-handed alpha
Helix 96	AK6	C	340	354	Right-handed alpha
Helix 97	AK7	C	375	385	Right-handed alpha
Helix 98	AK8	C	386	401	Right-handed alpha
Helix 99	AK9	C	401	408	Right-handed alpha
Helix 100	AL1	C	415	422	Right-handed alpha
Helix 101	AL2	C	426	431	Right-handed alpha
Helix 102	AL3	C	437	442	Right-handed alpha
Helix 103	AL4	C	446	450	Right-handed 310
Helix 104	AL5	C	464	487	Right-handed alpha
Helix 105	AL6	C	504	509	Right-handed alpha
Helix 106	AL7	C	511	524	Right-handed alpha
Helix 107	AL8	C	563	572	Right-handed alpha
Helix 108	AL9	C	572	577	Right-handed alpha
Helix 109	AM1	C	580	592	Right-handed alpha
Helix 110	AM2	C	594	600	Right-handed alpha
Helix 111	AM3	H	7	39	Right-handed alpha
Helix 112	AM4	H	56	69	Right-handed alpha
Helix 113	AM5	H	81	93	Right-handed alpha
Helix 114	AM6	H	95	101	Right-handed 310
Helix 115	AM7	H	115	125	Right-handed alpha
Helix 116	AM8	H	126	137	Right-handed alpha
Helix 117	AM9	H	139	158	Right-handed alpha
Helix 118	AN1	H	159	164	Right-handed alpha
Helix 119	AN2	H	164	172	Right-handed alpha
Helix 120	AN3	H	175	182	Right-handed alpha
Helix 121	AN4	H	192	207	Right-handed alpha
Helix 122	AN5	H	230	257	Right-handed alpha
Helix 123	AN6	H	268	285	Right-handed alpha
Helix 124	AN7	H	286	288	Right-handed 310
Helix 125	AN8	H	293	304	Right-handed alpha
Helix 126	AN9	H	305	325	Right-handed alpha
Helix 127	AO1	J	2	21	Right-handed alpha
Helix 128	AO2	J	24	47	Right-handed alpha
Helix 129	AO3	J	48	59	Right-handed alpha
Helix 130	AO4	J	62	75	Right-handed alpha
Helix 131	AO5	J	79	84	Right-handed alpha
Helix 132	AO6	J	85	89	Right-handed 310
Helix 133	AO7	J	93	113	Right-handed alpha
Helix 134	AO8	J	125	134	Right-handed alpha
Helix 135	AO9	J	137	158	Right-handed alpha
Helix 136	AP1	K	3	25	Right-handed alpha
Helix 137	AP2	K	27	54	Right-handed alpha
Helix 138	AP3	K	56	88	Right-handed alpha
Helix 139	AP4	K	91	96	Right-handed 310
Helix 140	AP5	M	4	20	Right-handed alpha
Helix 141	AP6	M	21	24	Right-handed 310
Helix 142	AP7	M	27	50	Right-handed alpha
Helix 143	AP8	M	84	105	Right-handed alpha
Helix 144	AP9	M	112	133	Right-handed alpha
Helix 145	AQ1	M	135	144	Right-handed alpha
Helix 146	AQ2	M	146	157	Right-handed alpha
Helix 147	AQ3	M	168	201	Right-handed alpha
Helix 148	AQ4	M	216	235	Right-handed alpha
Helix 149	AQ5	M	242	251	Right-handed alpha
Helix 150	AQ6	M	255	260	Right-handed alpha
Helix 151	AQ7	M	265	275	Right-handed alpha
Helix 152	AQ8	M	279	286	Right-handed alpha
Helix 153	AQ9	M	286	308	Right-handed alpha
Helix 154	AR1	M	310	331	Right-handed alpha
Helix 155	AR2	M	334	367	Right-handed alpha
Helix 156	AR3	M	370	374	Right-handed 310
Helix 157	AR4	M	376	380	Right-handed 310
Helix 158	AR5	M	383	396	Right-handed alpha
Helix 159	AR6	M	402	416	Right-handed alpha
Helix 160	AR7	M	418	427	Right-handed alpha
Helix 161	AR8	M	427	445	Right-handed alpha
Helix 162	AR9	M	450	455	Right-handed 310
Helix 163	AS1	M	461	481	Right-handed alpha
Helix 164	AS2	M	482	489	Right-handed alpha
Helix 165	AS3	M	489	502	Right-handed alpha
Helix 166	AS4	A	8	36	Right-handed alpha
Helix 167	AS5	A	66	90	Right-handed alpha
Helix 168	AS6	A	91	120	Right-handed alpha
Helix 169	AS7	L	5	22	Right-handed alpha
Helix 170	AS8	L	26	56	Right-handed alpha
Helix 171	AS9	L	82	107	Right-handed alpha
Helix 172	AT1	L	112	132	Right-handed alpha
Helix 173	AT2	L	135	155	Right-handed alpha
Helix 174	AT3	L	160	193	Right-handed alpha
Helix 175	AT4	L	196	208	Right-handed alpha
Helix 176	AT5	L	212	230	Right-handed alpha
Helix 177	AT6	L	240	245	Right-handed 310
Helix 178	AT7	L	246	256	Right-handed alpha
Helix 179	AT8	L	258	269	Right-handed alpha
Helix 180	AT9	L	269	275	Right-handed alpha
Helix 181	AU1	L	276	299	Right-handed alpha
Helix 182	AU2	L	303	325	Right-handed alpha
Helix 183	AU3	L	327	353	Right-handed alpha
Helix 184	AU4	L	354	360	Right-handed 310
Helix 185	AU5	L	367	372	Right-handed alpha
Helix 186	AU6	L	374	387	Right-handed alpha
Helix 187	AU7	L	393	409	Right-handed alpha
Helix 188	AU8	L	411	437	Right-handed alpha
Helix 189	AU9	L	454	465	Right-handed alpha
Helix 190	AV1	L	466	471	Right-handed 310
Helix 191	AV2	L	489	496	Right-handed alpha
Helix 192	AV3	L	497	512	Right-handed alpha
Helix 193	AV4	L	518	524	Right-handed alpha
Helix 194	AV5	L	525	537	Right-handed alpha
Helix 195	AV6	L	540	549	Right-handed alpha
Helix 196	AV7	L	549	560	Right-handed alpha
Helix 197	AV8	L	563	570	Right-handed alpha
Helix 198	AV9	L	570	584	Right-handed alpha
Helix 199	AW1	L	590	613	Right-handed alpha
Helix 200	AW2	N	6	11	Right-handed alpha
Helix 201	AW3	N	11	31	Right-handed alpha
Helix 202	AW4	N	33	51	Right-handed alpha
Helix 203	AW5	N	51	59	Right-handed alpha
Helix 204	AW6	N	70	97	Right-handed alpha
Helix 205	AW7	N	103	121	Right-handed alpha
Helix 206	AW8	N	124	144	Right-handed alpha
Helix 207	AW9	N	149	182	Right-handed alpha
Helix 208	AX1	N	185	189	Right-handed 310
Helix 209	AX2	N	200	218	Right-handed alpha
Helix 210	AX3	N	226	234	Right-handed alpha
Helix 211	AX4	N	235	261	Right-handed alpha
Helix 212	AX5	N	262	265	Right-handed 310
Helix 213	AX6	N	266	288	Right-handed alpha
Helix 214	AX7	N	293	315	Right-handed alpha
Helix 215	AX8	N	321	348	Right-handed alpha
Helix 216	AX9	N	364	368	Right-handed 310
Helix 217	AY1	N	369	384	Right-handed alpha
Helix 218	AY2	N	389	405	Right-handed alpha
Helix 219	AY3	N	407	431	Right-handed alpha
Helix 220	AY4	N	447	470	Right-handed alpha
Helix 221	AY5	N	471	481	Right-handed alpha

There are 28 sheets in PDB entry 9TAJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	131	first strand
Strand 2	E	87	92	parallel
Strand 3	E	143	145	anti-parallel
Strand 4	E	148	150	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	168	174	first strand
Strand 2	F	127	133	parallel
Strand 3	F	86	91	parallel
Strand 4	F	214	218	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	260	265	first strand
Strand 2	F	247	254	anti-parallel
Strand 3	F	325	330	parallel
Strand 4	F	287	291	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	14	first strand
Strand 2	G	5	8	anti-parallel
Strand 3	G	77	80	parallel
Strand 4	G	51	55	anti-parallel
Strand 5	G	64	67	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	146	148	first strand
Strand 2	G	208	210	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	173	175	first strand
Strand 2	G	182	184	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	224	225	first strand
Strand 2	G	238	244	anti-parallel
Strand 3	G	228	229	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	224	225	first strand
Strand 2	G	238	244	anti-parallel
Strand 3	G	247	253	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	292	294	first strand
Strand 2	G	285	287	anti-parallel
Strand 3	G	608	611	anti-parallel
Strand 4	G	591	596	parallel
Strand 5	G	565	569	parallel
Strand 6	G	314	317	parallel
Strand 7	G	339	340	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	447	450	first strand
Strand 2	G	431	435	parallel
Strand 3	G	376	380	parallel
Strand 4	G	498	503	parallel
Strand 5	G	530	534	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	620	623	first strand
Strand 2	G	628	632	anti-parallel
Strand 3	G	785	786	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	704	705	first strand
Strand 2	G	736	737	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	873	875	first strand
Strand 2	G	842	844	parallel
Strand 3	G	883	887	anti-parallel
Strand 4	G	812	817	parallel
Strand 5	G	901	902	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	860	862	first strand
Strand 2	G	869	871	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	48	50	first strand
Strand 2	I	114	116	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	75	81	first strand
Strand 2	I	87	95	anti-parallel
Strand 3	I	131	132	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	25	first strand
Strand 2	B	3	6	anti-parallel
Strand 3	B	194	195	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	60	first strand
Strand 2	B	95	99	parallel
Strand 3	B	122	126	parallel
Strand 4	B	153	155	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	41	first strand
Strand 2	C	49	52	anti-parallel
Strand 3	C	109	117	parallel
Strand 4	C	96	104	anti-parallel
Strand 5	C	73	81	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	125	first strand
Strand 2	C	148	150	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	238	first strand
Strand 2	C	241	248	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	364	first strand
Strand 2	C	367	368	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	531	539	first strand
Strand 2	C	542	550	anti-parallel
Strand 3	C	558	562	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	65	67	first strand
Strand 2	M	81	83	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	70	72	first strand
Strand 2	M	77	78	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	60	62	first strand
Strand 2	L	79	81	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	66	70	first strand
Strand 2	L	73	76	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	61	63	first strand
Strand 2	N	67	69	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9TAJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9TAJ