Analysis of interatomic Contacts of Structural Units in PDB entry:
9TB0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9TB0 entry

There are 4 chains in PDB entry 9TB0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 2	TYR 370
B	GLU 2	TYR 370
C	THR 9	GLY 394
D	GLU 7	LEU 196

There are 48 helices in PDB entry 9TB0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	26	Right-handed alpha
Helix 2	AA2	A	27	50	Right-handed alpha
Helix 3	AA3	A	53	73	Right-handed alpha
Helix 4	AA4	A	78	85	Right-handed alpha
Helix 5	AA5	A	93	113	Right-handed alpha
Helix 6	AA6	A	119	132	Right-handed alpha
Helix 7	AA7	A	160	176	Right-handed alpha
Helix 8	AA8	A	182	198	Right-handed alpha
Helix 9	AA9	A	203	219	Right-handed alpha
Helix 10	AB1	A	229	236	Right-handed alpha
Helix 11	AB2	A	236	250	Right-handed alpha
Helix 12	AB3	A	252	293	Right-handed alpha
Helix 13	AB4	A	298	308	Right-handed alpha
Helix 14	AB5	A	312	319	Right-handed alpha
Helix 15	AB6	A	323	337	Right-handed alpha
Helix 16	AB7	A	353	362	Right-handed alpha
Helix 17	AB8	B	19	26	Right-handed alpha
Helix 18	AB9	B	27	50	Right-handed alpha
Helix 19	AC1	B	53	73	Right-handed alpha
Helix 20	AC2	B	78	85	Right-handed alpha
Helix 21	AC3	B	93	113	Right-handed alpha
Helix 22	AC4	B	119	132	Right-handed alpha
Helix 23	AC5	B	160	176	Right-handed alpha
Helix 24	AC6	B	182	198	Right-handed alpha
Helix 25	AC7	B	203	219	Right-handed alpha
Helix 26	AC8	B	229	236	Right-handed alpha
Helix 27	AC9	B	236	250	Right-handed alpha
Helix 28	AD1	B	252	293	Right-handed alpha
Helix 29	AD2	B	298	308	Right-handed alpha
Helix 30	AD3	B	312	319	Right-handed alpha
Helix 31	AD4	B	323	337	Right-handed alpha
Helix 32	AD5	B	353	362	Right-handed alpha
Helix 33	AD6	C	24	40	Right-handed alpha
Helix 34	AD7	C	84	92	Right-handed alpha
Helix 35	AD8	C	113	127	Right-handed alpha
Helix 36	AD9	C	137	141	Right-handed 310
Helix 37	AE1	C	143	160	Right-handed alpha
Helix 38	AE2	C	174	181	Right-handed alpha
Helix 39	AE3	C	182	199	Right-handed alpha
Helix 40	AE4	C	283	287	Right-handed 310
Helix 41	AE5	D	24	39	Right-handed alpha
Helix 42	AE6	D	84	92	Right-handed alpha
Helix 43	AE7	D	113	127	Right-handed alpha
Helix 44	AE8	D	137	141	Right-handed 310
Helix 45	AE9	D	143	160	Right-handed alpha
Helix 46	AF1	D	174	181	Right-handed alpha
Helix 47	AF2	D	182	199	Right-handed alpha
Helix 48	AF3	D	283	287	Right-handed 310

There are 16 sheets in PDB entry 9TB0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	155	first strand
Strand 2	A	144	147	anti-parallel
Strand 3	C	63	66	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	344	first strand
Strand 2	A	349	352	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	155	first strand
Strand 2	B	144	147	anti-parallel
Strand 3	D	63	66	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	342	first strand
Strand 2	B	351	352	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	71	first strand
Strand 2	C	76	80	anti-parallel
Strand 3	C	13	19	parallel
Strand 4	C	102	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	170	172	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	214	first strand
Strand 2	C	292	294	anti-parallel
Strand 3	C	242	246	anti-parallel
Strand 4	C	252	261	anti-parallel
Strand 5	C	274	279	anti-parallel
Strand 6	C	225	231	anti-parallel
Strand 7	C	218	221	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	214	first strand
Strand 2	C	292	294	anti-parallel
Strand 3	C	242	246	anti-parallel
Strand 4	C	252	261	anti-parallel
Strand 5	C	264	266	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	238	first strand
Strand 2	C	268	269	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	311	first strand
Strand 2	C	356	368	anti-parallel
Strand 3	C	336	342	anti-parallel
Strand 4	C	330	333	anti-parallel
Strand 5	C	374	379	anti-parallel
Strand 6	C	382	394	anti-parallel
Strand 7	C	301	311	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	323	324	first strand
Strand 2	C	350	351	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	71	first strand
Strand 2	D	76	80	anti-parallel
Strand 3	D	12	19	parallel
Strand 4	D	101	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	170	172	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	212	214	first strand
Strand 2	D	292	294	anti-parallel
Strand 3	D	242	246	anti-parallel
Strand 4	D	252	261	anti-parallel
Strand 5	D	274	279	anti-parallel
Strand 6	D	225	231	anti-parallel
Strand 7	D	218	221	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	212	214	first strand
Strand 2	D	292	294	anti-parallel
Strand 3	D	242	246	anti-parallel
Strand 4	D	252	261	anti-parallel
Strand 5	D	264	266	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	238	first strand
Strand 2	D	268	269	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	311	first strand
Strand 2	D	356	368	anti-parallel
Strand 3	D	336	343	anti-parallel
Strand 4	D	330	333	anti-parallel
Strand 5	D	374	379	anti-parallel
Strand 6	D	382	392	anti-parallel
Strand 7	D	301	311	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	323	324	first strand
Strand 2	D	350	351	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9TB0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9TB0