Analysis of interatomic Contacts of Structural Units in PDB entry:
9TBJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9TBJ entry

There are 3 chains in PDB entry 9TBJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 24	SER 446
B	HIS 24	ASP 447
C	HIS 24	TYR 443

There are 48 helices in PDB entry 9TBJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	80	Right-handed alpha
Helix 2	AA2	A	107	122	Right-handed alpha
Helix 3	AA3	A	147	153	Right-handed alpha
Helix 4	AA4	A	157	172	Right-handed alpha
Helix 5	AA5	A	174	184	Right-handed alpha
Helix 6	AA6	A	197	213	Right-handed alpha
Helix 7	AA7	A	220	242	Right-handed alpha
Helix 8	AA8	A	248	255	Right-handed alpha
Helix 9	AA9	A	259	275	Right-handed alpha
Helix 10	AB1	A	286	298	Right-handed alpha
Helix 11	AB2	A	372	380	Right-handed alpha
Helix 12	AB3	A	388	392	Right-handed 310
Helix 13	AB4	A	394	399	Right-handed alpha
Helix 14	AB5	A	400	402	Right-handed 310
Helix 15	AB6	A	414	424	Right-handed alpha
Helix 16	AB7	B	61	79	Right-handed alpha
Helix 17	AB8	B	107	122	Right-handed alpha
Helix 18	AB9	B	147	156	Right-handed alpha
Helix 19	AC1	B	157	173	Right-handed alpha
Helix 20	AC2	B	174	184	Right-handed alpha
Helix 21	AC3	B	187	191	Right-handed 310
Helix 22	AC4	B	196	214	Right-handed alpha
Helix 23	AC5	B	220	243	Right-handed alpha
Helix 24	AC6	B	248	255	Right-handed alpha
Helix 25	AC7	B	258	273	Right-handed alpha
Helix 26	AC8	B	286	298	Right-handed alpha
Helix 27	AC9	B	372	380	Right-handed alpha
Helix 28	AD1	B	381	383	Right-handed 310
Helix 29	AD2	B	394	399	Right-handed alpha
Helix 30	AD3	B	414	424	Right-handed alpha
Helix 31	AD4	C	46	51	Right-handed alpha
Helix 32	AD5	C	61	80	Right-handed alpha
Helix 33	AD6	C	107	122	Right-handed alpha
Helix 34	AD7	C	147	156	Right-handed alpha
Helix 35	AD8	C	157	173	Right-handed alpha
Helix 36	AD9	C	174	184	Right-handed alpha
Helix 37	AE1	C	188	192	Right-handed 310
Helix 38	AE2	C	196	213	Right-handed alpha
Helix 39	AE3	C	220	242	Right-handed alpha
Helix 40	AE4	C	248	255	Right-handed alpha
Helix 41	AE5	C	258	275	Right-handed alpha
Helix 42	AE6	C	286	298	Right-handed alpha
Helix 43	AE7	C	372	380	Right-handed alpha
Helix 44	AE8	C	381	383	Right-handed 310
Helix 45	AE9	C	388	392	Right-handed 310
Helix 46	AF1	C	394	399	Right-handed alpha
Helix 47	AF2	C	400	402	Right-handed 310
Helix 48	AF3	C	414	424	Right-handed alpha

There are 12 sheets in PDB entry 9TBJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	132	first strand
Strand 2	A	100	104	parallel
Strand 3	A	280	285	parallel
Strand 4	A	25	35	parallel
Strand 5	A	312	320	anti-parallel
Strand 6	A	327	337	anti-parallel
Strand 7	A	345	348	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	132	first strand
Strand 2	A	100	104	parallel
Strand 3	A	280	285	parallel
Strand 4	A	25	35	parallel
Strand 5	A	312	320	anti-parallel
Strand 6	A	327	337	anti-parallel
Strand 7	A	369	371	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	356	first strand
Strand 2	A	362	364	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	435	first strand
Strand 2	A	442	444	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	132	first strand
Strand 2	B	100	104	parallel
Strand 3	B	280	285	parallel
Strand 4	B	25	35	parallel
Strand 5	B	312	320	anti-parallel
Strand 6	B	327	338	anti-parallel
Strand 7	B	344	348	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	132	first strand
Strand 2	B	100	104	parallel
Strand 3	B	280	285	parallel
Strand 4	B	25	35	parallel
Strand 5	B	312	320	anti-parallel
Strand 6	B	327	338	anti-parallel
Strand 7	B	369	371	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	356	first strand
Strand 2	B	362	364	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	433	435	first strand
Strand 2	B	442	444	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	132	first strand
Strand 2	C	100	104	parallel
Strand 3	C	280	285	parallel
Strand 4	C	25	35	parallel
Strand 5	C	312	320	anti-parallel
Strand 6	C	327	338	anti-parallel
Strand 7	C	344	348	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	132	first strand
Strand 2	C	100	104	parallel
Strand 3	C	280	285	parallel
Strand 4	C	25	35	parallel
Strand 5	C	312	320	anti-parallel
Strand 6	C	327	338	anti-parallel
Strand 7	C	369	371	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	356	first strand
Strand 2	C	362	364	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	434	435	first strand
Strand 2	C	442	443	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9TBJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9TBJ