Analysis of interatomic Contacts of Structural Units in PDB entry:
9TDT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9TDT entry

There are 4 chains in PDB entry 9TDT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 797TRP 2549
C
 VAL 8ASP 322
E
 GLU 24ALA 1694
G
 ALA 2LEU 146
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are180 helices in PDB entry 9TDT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
798 809Right-handed alpha
Helix 2
AA2
A
810 814Right-handed 310
Helix 3
AA3
A
816 825Right-handed alpha
Helix 4
AA4
A
837 852Right-handed alpha
Helix 5
AA5
A
856 861Right-handed alpha
Helix 6
AA6
A
863 875Right-handed alpha
Helix 7
AA7
A
877 892Right-handed alpha
Helix 8
AA8
A
895 902Right-handed alpha
Helix 9
AA9
A
931 935Right-handed alpha
Helix 10
AB1
A
942 961Right-handed alpha
Helix 11
AB2
A
962 966Right-handed 310
Helix 12
AB3
A
967 983Right-handed alpha
Helix 13
AB4
A
984 988Right-handed 310
Helix 14
AB5
A
989 1004Right-handed alpha
Helix 15
AB6
A
1008 1024Right-handed alpha
Helix 16
AB7
A
1025 1029Right-handed 310
Helix 17
AB8
A
1030 1042Right-handed alpha
Helix 18
AB9
A
1048 1064Right-handed alpha
Helix 19
AC1
A
1065 1069Right-handed 310
Helix 20
AC2
A
1070 1085Right-handed alpha
Helix 21
AC3
A
1087 1089Right-handed 310
Helix 22
AC4
A
1090 1101Right-handed alpha
Helix 23
AC5
A
1102 1109Right-handed 310
Helix 24
AC6
A
1110 1124Right-handed alpha
Helix 25
AC7
A
1128 1143Right-handed alpha
Helix 26
AC8
A
1148 1150Right-handed 310
Helix 27
AC9
A
1151 1164Right-handed alpha
Helix 28
AD1
A
1169 1185Right-handed alpha
Helix 29
AD2
A
1186 1190Right-handed 310
Helix 30
AD3
A
1191 1202Right-handed alpha
Helix 31
AD4
A
1206 1219Right-handed alpha
Helix 32
AD5
A
1228 1238Right-handed alpha
Helix 33
AD6
A
1262 1270Right-handed alpha
Helix 34
AD7
A
1276 1295Right-handed alpha
Helix 35
AD8
A
1297 1302Right-handed alpha
Helix 36
AD9
A
1303 1310Right-handed alpha
Helix 37
AE1
A
1311 1317Right-handed alpha
Helix 38
AE2
A
1317 1327Right-handed alpha
Helix 39
AE3
A
1330 1347Right-handed alpha
Helix 40
AE4
A
1350 1367Right-handed alpha
Helix 41
AE5
A
1375 1378Right-handed 310
Helix 42
AE6
A
1379 1390Right-handed alpha
Helix 43
AE7
A
1392 1405Right-handed alpha
Helix 44
AE8
A
1409 1423Right-handed alpha
Helix 45
AE9
A
1425 1440Right-handed alpha
Helix 46
AF1
A
1441 1445Right-handed 310
Helix 47
AF2
A
1446 1453Right-handed alpha
Helix 48
AF3
A
1455 1470Right-handed alpha
Helix 49
AF4
A
1473 1487Right-handed alpha
Helix 50
AF5
A
1489 1499Right-handed alpha
Helix 51
AF6
A
1505 1524Right-handed alpha
Helix 52
AF7
A
1525 1534Right-handed alpha
Helix 53
AF8
A
1540 1554Right-handed alpha
Helix 54
AF9
A
1556 1580Right-handed alpha
Helix 55
AG1
A
1582 1608Right-handed alpha
Helix 56
AG2
A
1611 1624Right-handed alpha
Helix 57
AG3
A
1629 1641Right-handed alpha
Helix 58
AG4
A
1649 1663Right-handed alpha
Helix 59
AG5
A
1665 1678Right-handed alpha
Helix 60
AG6
A
1693 1706Right-handed alpha
Helix 61
AG7
A
1709 1728Right-handed alpha
Helix 62
AG8
A
1739 1763Right-handed alpha
Helix 63
AG9
A
1767 1783Right-handed alpha
Helix 64
AH1
A
1786 1811Right-handed alpha
Helix 65
AH2
A
1874 1895Right-handed alpha
Helix 66
AH3
A
1899 1914Right-handed alpha
Helix 67
AH4
A
1916 1930Right-handed alpha
Helix 68
AH5
A
1931 1937Right-handed 310
Helix 69
AH6
A
1938 1944Right-handed alpha
Helix 70
AH7
A
1950 1968Right-handed alpha
Helix 71
AH8
A
1968 1980Right-handed alpha
Helix 72
AH9
A
1984 1999Right-handed alpha
Helix 73
AI1
A
2002 2021Right-handed alpha
Helix 74
AI2
A
2022 2040Right-handed alpha
Helix 75
AI3
A
2043 2060Right-handed alpha
Helix 76
AI4
A
2064 2092Right-handed alpha
Helix 77
AI5
A
2093 2115Right-handed alpha
Helix 78
AI6
A
2116 2118Right-handed 310
Helix 79
AI7
A
2123 2127Right-handed alpha
Helix 80
AI8
A
2127 2132Right-handed alpha
Helix 81
AI9
A
2192 2211Right-handed alpha
Helix 82
AJ1
A
2212 2219Right-handed alpha
Helix 83
AJ2
A
2246 2258Right-handed alpha
Helix 84
AJ3
A
2262 2272Right-handed alpha
Helix 85
AJ4
A
2274 2278Right-handed 310
Helix 86
AJ5
A
2279 2293Right-handed alpha
Helix 87
AJ6
A
2297 2306Right-handed alpha
Helix 88
AJ7
A
2309 2335Right-handed alpha
Helix 89
AJ8
A
2363 2367Right-handed 310
Helix 90
AJ9
A
2380 2386Right-handed alpha
Helix 91
AK1
A
2394 2410Right-handed alpha
Helix 92
AK2
A
2410 2423Right-handed alpha
Helix 93
AK3
A
2427 2431Right-handed 310
Helix 94
AK4
A
2495 2508Right-handed alpha
Helix 95
AK5
A
2520 2534Right-handed alpha
Helix 96
AK6
A
2534 2539Right-handed alpha
Helix 97
AK7
A
2542 2546Right-handed 310
Helix 98
AK8
C
264 268Right-handed 310
Helix 99
AK9
E
33 47Right-handed alpha
Helix 100
AL1
E
52 71Right-handed alpha
Helix 101
AL2
E
80 92Right-handed alpha
Helix 102
AL3
E
96 111Right-handed alpha
Helix 103
AL4
E
113 122Right-handed alpha
Helix 104
AL5
E
124 135Right-handed alpha
Helix 105
AL6
E
139 157Right-handed alpha
Helix 106
AL7
E
158 161Right-handed 310
Helix 107
AL8
E
162 176Right-handed alpha
Helix 108
AL9
E
183 196Right-handed alpha
Helix 109
AM1
E
198 206Right-handed alpha
Helix 110
AM2
E
206 218Right-handed alpha
Helix 111
AM3
E
220 237Right-handed alpha
Helix 112
AM4
E
240 244Right-handed 310
Helix 113
AM5
E
250 253Right-handed 310
Helix 114
AM6
E
254 259Right-handed alpha
Helix 115
AM7
E
269 271Right-handed 310
Helix 116
AM8
E
272 292Right-handed alpha
Helix 117
AM9
E
294 303Right-handed alpha
Helix 118
AN1
E
307 317Right-handed alpha
Helix 119
AN2
E
320 335Right-handed alpha
Helix 120
AN3
E
345 353Right-handed alpha
Helix 121
AN4
E
359 363Right-handed 310
Helix 122
AN5
E
367 377Right-handed alpha
Helix 123
AN6
E
386 402Right-handed alpha
Helix 124
AN7
E
403 414Right-handed alpha
Helix 125
AN8
E
416 438Right-handed alpha
Helix 126
AN9
E
439 444Right-handed alpha
Helix 127
AO1
E
445 448Right-handed 310
Helix 128
AO2
E
449 458Right-handed alpha
Helix 129
AO3
E
462 486Right-handed alpha
Helix 130
AO4
E
491 507Right-handed alpha
Helix 131
AO5
E
524 536Right-handed alpha
Helix 132
AO6
E
536 541Right-handed alpha
Helix 133
AO7
E
547 557Right-handed alpha
Helix 134
AO8
E
567 582Right-handed alpha
Helix 135
AO9
E
583 586Right-handed 310
Helix 136
AP1
E
597 615Right-handed alpha
Helix 137
AP2
E
615 639Right-handed alpha
Helix 138
AP3
E
649 653Right-handed 310
Helix 139
AP4
E
654 657Right-handed 310
Helix 140
AP5
E
658 668Right-handed alpha
Helix 141
AP6
E
669 679Right-handed alpha
Helix 142
AP7
E
680 691Right-handed alpha
Helix 143
AP8
E
695 703Right-handed alpha
Helix 144
AP9
E
711 724Right-handed alpha
Helix 145
AQ1
E
725 742Right-handed alpha
Helix 146
AQ2
E
746 758Right-handed alpha
Helix 147
AQ3
E
759 761Right-handed 310
Helix 148
AQ4
E
763 778Right-handed alpha
Helix 149
AQ5
E
780 791Right-handed alpha
Helix 150
AQ6
E
794 797Right-handed 310
Helix 151
AQ7
E
798 806Right-handed alpha
Helix 152
AQ8
E
807 810Right-handed 310
Helix 153
AQ9
E
811 820Right-handed alpha
Helix 154
AR1
E
822 834Right-handed alpha
Helix 155
AR2
E
834 852Right-handed alpha
Helix 156
AR3
E
881 887Right-handed alpha
Helix 157
AR4
E
889 899Right-handed alpha
Helix 158
AR5
E
901 911Right-handed alpha
Helix 159
AR6
E
916 934Right-handed alpha
Helix 160
AR7
E
936 947Right-handed alpha
Helix 161
AR8
E
948 959Right-handed alpha
Helix 162
AR9
E
961 976Right-handed alpha
Helix 163
AS1
E
978 987Right-handed alpha
Helix 164
AS2
E
1432 1437Right-handed 310
Helix 165
AS3
E
1444 1448Right-handed 310
Helix 166
AS4
E
1481 1485Right-handed alpha
Helix 167
AS5
E
1488 1492Right-handed 310
Helix 168
AS6
E
1522 1529Right-handed alpha
Helix 169
AS7
E
1606 1624Right-handed alpha
Helix 170
AS8
E
1628 1643Right-handed alpha
Helix 171
AS9
E
1644 1647Right-handed 310
Helix 172
AT1
E
1649 1663Right-handed alpha
Helix 173
AT2
E
1666 1676Right-handed alpha
Helix 174
AT3
E
1682 1694Right-handed alpha
Helix 175
AT4
G
6 22Right-handed alpha
Helix 176
AT5
G
25 31Right-handed alpha
Helix 177
AT6
G
32 36Right-handed 310
Helix 178
AT7
G
84 100Right-handed alpha
Helix 179
AT8
G
119 124Right-handed alpha
Helix 180
AT9
G
138 143Right-handed alpha
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There are 11 sheets in PDB entry 9TDT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2120 2122first strand
Strand 2
A
2159 2162anti-parallel
Strand 3
A
2170 2176anti-parallel
Strand 4
A
2153 2156anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2120 2122first strand
Strand 2
A
2159 2162anti-parallel
Strand 3
A
2170 2176anti-parallel
Strand 4
A
2181 2187anti-parallel
Strand 5
A
2234 2238anti-parallel
Strand 6
A
2227 2231anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2243 2245first strand
Strand 2
A
2344 2347anti-parallel
Strand 3
A
2353 2355anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 39first strand
Strand 2
C
23 27anti-parallel
Strand 3
C
14 19anti-parallel
Strand 4
C
315 321anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 50first strand
Strand 2
C
56 60anti-parallel
Strand 3
C
65 69anti-parallel
Strand 4
C
79 82anti-parallel
Strand 5
G
104 107parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 93first strand
Strand 2
C
99 104anti-parallel
Strand 3
C
108 113anti-parallel
Strand 4
C
123 126anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 136first strand
Strand 2
C
142 147anti-parallel
Strand 3
C
152 156anti-parallel
Strand 4
C
161 165anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
173 178first strand
Strand 2
C
184 189anti-parallel
Strand 3
C
194 201anti-parallel
Strand 4
C
208 216anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
223 228first strand
Strand 2
C
234 239anti-parallel
Strand 3
C
243 248anti-parallel
Strand 4
C
254 259anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
275 278first strand
Strand 2
C
284 288anti-parallel
Strand 3
C
294 298anti-parallel
Strand 4
C
304 308anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
990 992first strand
Strand 2
E
1428 1430anti-parallel
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