Analysis of interatomic Contacts of Structural Units in PDB entry:
9TEN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9TEN entry

There are 4 chains in PDB entry 9TEN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 C 3 T 30
F
 A 31 G 58
J
 ASP 23ASN 239
B
 ASP 140ASP 592
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9TEN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
J
56 68Right-handed alpha
Helix 2
AA2
J
140 150Right-handed alpha
Helix 3
AA3
J
167 171Right-handed 310
Helix 4
AA4
J
179 198Right-handed alpha
Helix 5
AA5
B
141 163Right-handed alpha
Helix 6
AA6
B
185 189Right-handed 310
Helix 7
AA7
B
211 226Right-handed alpha
Helix 8
AA8
B
243 254Right-handed alpha
Helix 9
AA9
B
258 264Right-handed alpha
Helix 10
AB1
B
273 283Right-handed alpha
Helix 11
AB2
B
331 345Right-handed alpha
Helix 12
AB3
B
379 382Right-handed 310
Helix 13
AB4
B
409 426Right-handed alpha
Helix 14
AB5
B
430 444Right-handed alpha
Helix 15
AB6
B
514 518Right-handed 310
Helix 16
AB7
B
522 526Right-handed 310
Helix 17
AB8
B
540 545Right-handed alpha
Helix 18
AB9
B
546 557Right-handed alpha
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There are 6 sheets in PDB entry 9TEN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
72 73first strand
Strand 2
J
83 86anti-parallel
Strand 3
J
42 54anti-parallel
Strand 4
J
27 36anti-parallel
Strand 5
J
173 177parallel
Strand 6
J
158 164anti-parallel
Strand 7
J
91 103anti-parallel
Strand 8
J
202 213anti-parallel
Strand 9
J
225 237anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
105 109first strand
Strand 2
J
112 117anti-parallel
Strand 3
J
122 124anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 184first strand
Strand 2
B
191 200anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 297first strand
Strand 2
B
303 312anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 366first strand
Strand 2
B
558 563parallel
Strand 3
B
580 584anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
372 375first strand
Strand 2
B
384 387anti-parallel
Strand 3
B
407 408anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il