Analysis of interatomic Contacts of Structural Units in PDB entry:
9TFV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9TFV entry

There are 4 chains in PDB entry 9TFV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 1	GLU 324
B	ARG 1	GLU 324
C	ARG 1	GLU 324
D	ARG 1	GLU 324

There are 25 helices in PDB entry 9TFV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	49	Right-handed 310
Helix 2	AA2	A	52	83	Right-handed alpha
Helix 3	AA3	A	105	119	Right-handed alpha
Helix 4	AA4	A	131	162	Right-handed alpha
Helix 5	AA5	A	253	259	Right-handed alpha
Helix 6	AA6	A	314	318	Right-handed 310
Helix 7	AA7	B	45	49	Right-handed 310
Helix 8	AA8	B	52	83	Right-handed alpha
Helix 9	AA9	B	105	119	Right-handed alpha
Helix 10	AB1	B	131	162	Right-handed alpha
Helix 11	AB2	B	253	259	Right-handed alpha
Helix 12	AB3	B	314	318	Right-handed 310
Helix 13	AB4	C	45	49	Right-handed 310
Helix 14	AB5	C	52	83	Right-handed alpha
Helix 15	AB6	C	105	119	Right-handed alpha
Helix 16	AB7	C	131	162	Right-handed alpha
Helix 17	AB8	C	253	259	Right-handed alpha
Helix 18	AB9	C	314	318	Right-handed 310
Helix 19	AC1	D	45	49	Right-handed 310
Helix 20	AC2	D	52	83	Right-handed alpha
Helix 21	AC3	D	105	119	Right-handed alpha
Helix 22	AC4	D	131	162	Right-handed alpha
Helix 23	AC5	D	251	253	Right-handed 310
Helix 24	AC6	D	254	259	Right-handed alpha
Helix 25	AC7	D	314	318	Right-handed 310

There are 19 sheets in PDB entry 9TFV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	172	first strand
Strand 2	A	186	193	anti-parallel
Strand 3	A	241	243	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	172	first strand
Strand 2	A	186	193	anti-parallel
Strand 3	A	176	179	anti-parallel
Strand 4	A	293	295	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	218	first strand
Strand 2	A	200	211	anti-parallel
Strand 3	A	221	222	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	218	first strand
Strand 2	A	200	211	anti-parallel
Strand 3	A	265	274	anti-parallel
Strand 4	A	281	284	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	299	first strand
Strand 2	A	321	323	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	172	first strand
Strand 2	B	186	193	anti-parallel
Strand 3	B	241	243	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	172	first strand
Strand 2	B	186	193	anti-parallel
Strand 3	B	176	179	anti-parallel
Strand 4	B	293	295	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	218	first strand
Strand 2	B	199	211	anti-parallel
Strand 3	B	265	275	anti-parallel
Strand 4	B	281	284	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	199	211	anti-parallel
Strand 3	B	265	275	anti-parallel
Strand 4	B	287	288	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	299	first strand
Strand 2	B	321	323	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	172	first strand
Strand 2	C	186	193	anti-parallel
Strand 3	C	241	243	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	172	first strand
Strand 2	C	186	193	anti-parallel
Strand 3	C	176	179	anti-parallel
Strand 4	C	293	295	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	222	first strand
Strand 2	C	199	210	anti-parallel
Strand 3	C	265	275	anti-parallel
Strand 4	C	281	286	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	297	299	first strand
Strand 2	C	321	323	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	172	first strand
Strand 2	D	186	193	anti-parallel
Strand 3	D	241	243	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	172	first strand
Strand 2	D	186	193	anti-parallel
Strand 3	D	176	179	anti-parallel
Strand 4	D	293	295	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	221	222	first strand
Strand 2	D	199	210	anti-parallel
Strand 3	D	265	274	anti-parallel
Strand 4	D	281	284	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	237	first strand
Strand 2	D	199	210	anti-parallel
Strand 3	D	265	274	anti-parallel
Strand 4	D	287	288	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	297	299	first strand
Strand 2	D	321	323	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9TFV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9TFV