Analysis of interatomic Contacts of Structural Units in PDB entry:
9TFY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9TFY entry

There are 4 chains in PDB entry 9TFY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 78ALA 412
B
 SER 78ALA 412
C
 GLU 97PRO 287
D
 GLU 97PRO 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 9TFY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
85 90Right-handed alpha
Helix 2
AA2
A
91 96Right-handed alpha
Helix 3
AA3
A
97 100Right-handed 310
Helix 4
AA4
A
106 108Right-handed 310
Helix 5
AA5
A
145 160Right-handed alpha
Helix 6
AA6
A
191 196Right-handed alpha
Helix 7
AA7
A
197 199Right-handed 310
Helix 8
AA8
A
200 221Right-handed alpha
Helix 9
AA9
A
229 231Right-handed 310
Helix 10
AB1
A
265 269Right-handed 310
Helix 11
AB2
A
270 275Right-handed alpha
Helix 12
AB3
A
282 298Right-handed alpha
Helix 13
AB4
A
308 321Right-handed alpha
Helix 14
AB5
A
322 332Right-handed alpha
Helix 15
AB6
A
337 345Right-handed alpha
Helix 16
AB7
A
351 356Right-handed 310
Helix 17
AB8
A
360 364Right-handed 310
Helix 18
AB9
A
365 374Right-handed alpha
Helix 19
AC1
A
379 383Right-handed 310
Helix 20
AC2
A
385 391Right-handed alpha
Helix 21
AC3
A
392 394Right-handed 310
Helix 22
AC4
A
395 412Right-handed alpha
Helix 23
AC5
B
85 90Right-handed alpha
Helix 24
AC6
B
91 96Right-handed alpha
Helix 25
AC7
B
97 100Right-handed 310
Helix 26
AC8
B
106 108Right-handed 310
Helix 27
AC9
B
145 160Right-handed alpha
Helix 28
AD1
B
191 196Right-handed alpha
Helix 29
AD2
B
197 199Right-handed 310
Helix 30
AD3
B
200 221Right-handed alpha
Helix 31
AD4
B
229 231Right-handed 310
Helix 32
AD5
B
265 269Right-handed 310
Helix 33
AD6
B
270 275Right-handed alpha
Helix 34
AD7
B
282 298Right-handed alpha
Helix 35
AD8
B
308 321Right-handed alpha
Helix 36
AD9
B
322 332Right-handed alpha
Helix 37
AE1
B
337 345Right-handed alpha
Helix 38
AE2
B
351 356Right-handed 310
Helix 39
AE3
B
360 364Right-handed 310
Helix 40
AE4
B
365 374Right-handed alpha
Helix 41
AE5
B
379 383Right-handed 310
Helix 42
AE6
B
385 391Right-handed alpha
Helix 43
AE7
B
392 394Right-handed 310
Helix 44
AE8
B
395 412Right-handed alpha
Helix 45
AE9
C
100 106Right-handed alpha
Helix 46
AF1
C
118 123Right-handed alpha
Helix 47
AF2
C
130 135Right-handed alpha
Helix 48
AF3
C
137 147Right-handed alpha
Helix 49
AF4
C
157 182Right-handed alpha
Helix 50
AF5
C
182 195Right-handed alpha
Helix 51
AF6
C
203 207Right-handed 310
Helix 52
AF7
C
254 263Right-handed alpha
Helix 53
AF8
C
264 267Right-handed 310
Helix 54
AF9
D
100 106Right-handed alpha
Helix 55
AG1
D
118 123Right-handed alpha
Helix 56
AG2
D
130 135Right-handed alpha
Helix 57
AG3
D
137 146Right-handed alpha
Helix 58
AG4
D
157 180Right-handed alpha
Helix 59
AG5
D
182 195Right-handed alpha
Helix 60
AG6
D
203 207Right-handed 310
Helix 61
AG7
D
254 263Right-handed alpha
Helix 62
AG8
D
264 267Right-handed 310
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There are 10 sheets in PDB entry 9TFY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 115first strand
Strand 2
A
122 129anti-parallel
Strand 3
A
135 141anti-parallel
Strand 4
A
180 185anti-parallel
Strand 5
A
168 173anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 224first strand
Strand 2
A
251 252anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 236first strand
Strand 2
A
241 244anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 115first strand
Strand 2
B
122 129anti-parallel
Strand 3
B
135 141anti-parallel
Strand 4
B
180 185anti-parallel
Strand 5
B
168 173anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 224first strand
Strand 2
B
251 252anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 236first strand
Strand 2
B
241 244anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
212 215first strand
Strand 2
C
225 228anti-parallel
Strand 3
C
235 236anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
278 279first strand
Strand 2
C
282 283anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
212 215first strand
Strand 2
D
225 228anti-parallel
Strand 3
D
235 236anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
278 279first strand
Strand 2
D
282 283anti-parallel
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