Analysis of interatomic Contacts of Structural Units in PDB entry:
9THI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9THI entry

There are 2 chains in PDB entry 9THI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 789	ALA 1641
B	PRO 789	MET 1678

There are 60 helices in PDB entry 9THI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	794	799	Right-handed alpha
Helix 2	AA2	A	802	808	Right-handed alpha
Helix 3	AA3	A	818	828	Right-handed alpha
Helix 4	AA4	A	906	912	Right-handed alpha
Helix 5	AA5	A	912	917	Right-handed alpha
Helix 6	AA6	A	935	940	Right-handed alpha
Helix 7	AA7	A	953	968	Right-handed alpha
Helix 8	AA8	A	972	976	Right-handed 310
Helix 9	AA9	A	978	982	Right-handed 310
Helix 10	AB1	A	1039	1043	Right-handed 310
Helix 11	AB2	A	1047	1054	Right-handed alpha
Helix 12	AB3	A	1056	1066	Right-handed alpha
Helix 13	AB4	A	1170	1178	Right-handed alpha
Helix 14	AB5	A	1183	1198	Right-handed alpha
Helix 15	AB6	A	1200	1216	Right-handed alpha
Helix 16	AB7	A	1272	1281	Right-handed alpha
Helix 17	AB8	A	1293	1297	Right-handed 310
Helix 18	AB9	A	1306	1312	Right-handed alpha
Helix 19	AC1	A	1313	1328	Right-handed alpha
Helix 20	AC2	A	1331	1338	Right-handed alpha
Helix 21	AC3	A	1345	1355	Right-handed alpha
Helix 22	AC4	A	1370	1382	Right-handed alpha
Helix 23	AC5	A	1402	1404	Right-handed 310
Helix 24	AC6	A	1431	1438	Right-handed alpha
Helix 25	AC7	A	1443	1447	Right-handed 310
Helix 26	AC8	A	1501	1515	Right-handed alpha
Helix 27	AC9	A	1579	1581	Right-handed 310
Helix 28	AD1	A	1582	1590	Right-handed alpha
Helix 29	AD2	A	1620	1626	Right-handed alpha
Helix 30	AD3	A	1626	1640	Right-handed alpha
Helix 31	AD4	B	793	799	Right-handed alpha
Helix 32	AD5	B	802	807	Right-handed alpha
Helix 33	AD6	B	819	827	Right-handed alpha
Helix 34	AD7	B	906	919	Right-handed alpha
Helix 35	AD8	B	920	922	Right-handed 310
Helix 36	AD9	B	935	943	Right-handed alpha
Helix 37	AE1	B	953	968	Right-handed alpha
Helix 38	AE2	B	972	976	Right-handed 310
Helix 39	AE3	B	1031	1035	Right-handed 310
Helix 40	AE4	B	1047	1052	Right-handed 310
Helix 41	AE5	B	1059	1069	Right-handed alpha
Helix 42	AE6	B	1125	1131	Right-handed alpha
Helix 43	AE7	B	1170	1179	Right-handed alpha
Helix 44	AE8	B	1180	1182	Right-handed 310
Helix 45	AE9	B	1183	1198	Right-handed alpha
Helix 46	AF1	B	1200	1216	Right-handed alpha
Helix 47	AF2	B	1235	1240	Right-handed alpha
Helix 48	AF3	B	1272	1281	Right-handed alpha
Helix 49	AF4	B	1288	1290	Right-handed 310
Helix 50	AF5	B	1305	1327	Right-handed alpha
Helix 51	AF6	B	1332	1337	Right-handed alpha
Helix 52	AF7	B	1344	1353	Right-handed alpha
Helix 53	AF8	B	1370	1381	Right-handed alpha
Helix 54	AF9	B	1431	1438	Right-handed alpha
Helix 55	AG1	B	1443	1447	Right-handed 310
Helix 56	AG2	B	1501	1513	Right-handed alpha
Helix 57	AG3	B	1578	1590	Right-handed alpha
Helix 58	AG4	B	1626	1639	Right-handed alpha
Helix 59	AG5	B	1657	1660	Right-handed 310
Helix 60	AG6	B	1661	1666	Right-handed alpha

There are 28 sheets in PDB entry 9THI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	857	864	first strand
Strand 2	A	845	851	anti-parallel
Strand 3	A	1599	1601	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	870	872	first strand
Strand 2	A	1095	1097	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	874	876	first strand
Strand 2	A	881	883	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1102	1103	first strand
Strand 2	A	891	895	parallel
Strand 3	A	1266	1268	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	904	905	first strand
Strand 2	A	1284	1285	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	989	990	first strand
Strand 2	A	1080	1083	anti-parallel
Strand 3	A	1091	1093	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1025	1029	first strand
Strand 2	A	1109	1113	parallel
Strand 3	A	1044	1045	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1218	1219	first strand
Strand 2	A	1241	1242	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1222	1224	first strand
Strand 2	A	1537	1539	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1387	1391	first strand
Strand 2	A	1396	1400	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1414	1415	first strand
Strand 2	A	1421	1422	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1468	1469	first strand
Strand 2	A	1481	1482	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1518	1520	first strand
Strand 2	A	1574	1576	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	815	816	first strand
Strand 2	B	1383	1384	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	857	864	first strand
Strand 2	B	845	851	anti-parallel
Strand 3	B	1599	1601	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	870	872	first strand
Strand 2	B	1091	1097	anti-parallel
Strand 3	B	1076	1083	anti-parallel
Strand 4	B	989	990	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	870	872	first strand
Strand 2	B	1091	1097	anti-parallel
Strand 3	B	1076	1083	anti-parallel
Strand 4	B	997	1000	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	874	877	first strand
Strand 2	B	880	883	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1102	1103	first strand
Strand 2	B	891	895	parallel
Strand 3	B	1266	1268	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	903	905	first strand
Strand 2	B	1284	1286	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1025	1029	first strand
Strand 2	B	1109	1113	parallel
Strand 3	B	1044	1045	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1218	1219	first strand
Strand 2	B	1241	1242	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1222	1224	first strand
Strand 2	B	1537	1541	anti-parallel
Strand 3	B	1228	1229	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1359	1360	first strand
Strand 2	B	1363	1364	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1388	1392	first strand
Strand 2	B	1395	1399	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1414	1415	first strand
Strand 2	B	1421	1422	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1468	1469	first strand
Strand 2	B	1481	1482	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1518	1520	first strand
Strand 2	B	1574	1576	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9THI

Analysis of interatomic Contacts of Structural Units in PDB entry:
9THI