Analysis of interatomic Contacts of Structural Units in PDB entry:
9THZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9THZ entry

There are 2 chains in PDB entry 9THZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 19	LEU 647
B	GLN 11	LEU 647

There are 42 helices in PDB entry 9THZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	54	Right-handed alpha
Helix 2	AA2	A	89	94	Right-handed alpha
Helix 3	AA3	A	195	205	Right-handed alpha
Helix 4	AA4	A	249	253	Right-handed 310
Helix 5	AA5	A	259	271	Right-handed alpha
Helix 6	AA6	A	302	307	Right-handed 310
Helix 7	AA7	A	352	357	Right-handed alpha
Helix 8	AA8	A	359	383	Right-handed alpha
Helix 9	AA9	A	384	400	Right-handed alpha
Helix 10	AB1	A	401	404	Right-handed 310
Helix 11	AB2	A	409	414	Right-handed alpha
Helix 12	AB3	A	431	437	Right-handed alpha
Helix 13	AB4	A	452	458	Right-handed alpha
Helix 14	AB5	A	463	468	Right-handed alpha
Helix 15	AB6	A	479	484	Right-handed alpha
Helix 16	AB7	A	485	487	Right-handed 310
Helix 17	AB8	A	515	534	Right-handed alpha
Helix 18	AB9	A	562	571	Right-handed alpha
Helix 19	AC1	A	589	601	Right-handed alpha
Helix 20	AC2	A	607	624	Right-handed alpha
Helix 21	AC3	A	631	646	Right-handed alpha
Helix 22	AC4	B	30	54	Right-handed alpha
Helix 23	AC5	B	89	95	Right-handed alpha
Helix 24	AC6	B	124	128	Right-handed 310
Helix 25	AC7	B	129	136	Right-handed 310
Helix 26	AC8	B	195	206	Right-handed alpha
Helix 27	AC9	B	259	272	Right-handed alpha
Helix 28	AD1	B	332	336	Right-handed 310
Helix 29	AD2	B	353	358	Right-handed 310
Helix 30	AD3	B	359	384	Right-handed alpha
Helix 31	AD4	B	384	400	Right-handed alpha
Helix 32	AD5	B	401	406	Right-handed alpha
Helix 33	AD6	B	409	417	Right-handed alpha
Helix 34	AD7	B	431	438	Right-handed alpha
Helix 35	AD8	B	452	459	Right-handed alpha
Helix 36	AD9	B	462	469	Right-handed alpha
Helix 37	AE1	B	479	484	Right-handed alpha
Helix 38	AE2	B	513	534	Right-handed alpha
Helix 39	AE3	B	562	570	Right-handed alpha
Helix 40	AE4	B	589	598	Right-handed alpha
Helix 41	AE5	B	605	623	Right-handed alpha
Helix 42	AE6	B	632	646	Right-handed alpha

There are 10 sheets in PDB entry 9THZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	166	first strand
Strand 2	A	153	157	anti-parallel
Strand 3	A	137	145	anti-parallel
Strand 4	A	174	181	anti-parallel
Strand 5	A	76	81	anti-parallel
Strand 6	A	66	71	anti-parallel
Strand 7	A	214	219	parallel
Strand 8	A	239	241	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	283	first strand
Strand 2	A	291	298	anti-parallel
Strand 3	A	339	344	anti-parallel
Strand 4	A	314	318	parallel
Strand 5	A	322	327	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	419	first strand
Strand 2	A	429	430	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	475	first strand
Strand 2	A	445	449	parallel
Strand 3	A	493	497	parallel
Strand 4	A	489	490	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	543	first strand
Strand 2	A	581	585	parallel
Strand 3	A	552	555	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	168	first strand
Strand 2	B	152	157	anti-parallel
Strand 3	B	139	145	anti-parallel
Strand 4	B	174	180	anti-parallel
Strand 5	B	76	81	anti-parallel
Strand 6	B	66	69	anti-parallel
Strand 7	B	214	215	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	285	first strand
Strand 2	B	291	298	anti-parallel
Strand 3	B	339	344	anti-parallel
Strand 4	B	314	318	parallel
Strand 5	B	322	327	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	419	first strand
Strand 2	B	429	430	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	475	first strand
Strand 2	B	445	449	parallel
Strand 3	B	493	497	parallel
Strand 4	B	489	490	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	543	first strand
Strand 2	B	581	585	parallel
Strand 3	B	552	555	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9THZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9THZ