Analysis of interatomic Contacts of Structural Units in PDB entry:
9TI1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9TI1 entry

There are 4 chains in PDB entry 9TI1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 13ILE 145
A
 VAL 147ARG 340
B
 ASP 12ILE 145
B
 VAL 147PRO 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 9TI1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 26Right-handed 310
Helix 2
AA2
A
41 46Right-handed alpha
Helix 3
AA3
A
47 51Right-handed 310
Helix 4
AA4
A
52 70Right-handed alpha
Helix 5
AA5
A
80 84Right-handed 310
Helix 6
AA6
A
86 98Right-handed alpha
Helix 7
AA7
A
112 117Right-handed alpha
Helix 8
AA8
A
119 133Right-handed alpha
Helix 9
AA9
A
154 172Right-handed alpha
Helix 10
AB1
A
180 183Right-handed 310
Helix 11
AB2
A
184 196Right-handed alpha
Helix 12
AB3
A
199 201Right-handed 310
Helix 13
AB4
A
207 211Right-handed 310
Helix 14
AB5
A
213 223Right-handed alpha
Helix 15
AB6
A
242 250Right-handed alpha
Helix 16
AB7
A
253 267Right-handed alpha
Helix 17
AB8
A
269 271Right-handed 310
Helix 18
AB9
A
289 298Right-handed alpha
Helix 19
AC1
A
300 302Right-handed 310
Helix 20
AC2
A
303 316Right-handed alpha
Helix 21
AC3
A
319 328Right-handed alpha
Helix 22
AC4
A
328 336Right-handed alpha
Helix 23
AC5
B
24 26Right-handed 310
Helix 24
AC6
B
41 46Right-handed alpha
Helix 25
AC7
B
47 51Right-handed 310
Helix 26
AC8
B
52 70Right-handed alpha
Helix 27
AC9
B
80 84Right-handed 310
Helix 28
AD1
B
86 98Right-handed alpha
Helix 29
AD2
B
112 117Right-handed alpha
Helix 30
AD3
B
119 133Right-handed alpha
Helix 31
AD4
B
154 172Right-handed alpha
Helix 32
AD5
B
180 183Right-handed 310
Helix 33
AD6
B
184 196Right-handed alpha
Helix 34
AD7
B
199 201Right-handed 310
Helix 35
AD8
B
207 211Right-handed 310
Helix 36
AD9
B
213 223Right-handed alpha
Helix 37
AE1
B
242 250Right-handed alpha
Helix 38
AE2
B
253 267Right-handed alpha
Helix 39
AE3
B
269 271Right-handed 310
Helix 40
AE4
B
289 298Right-handed alpha
Helix 41
AE5
B
300 302Right-handed 310
Helix 42
AE6
B
303 316Right-handed alpha
Helix 43
AE7
B
319 328Right-handed alpha
Helix 44
AE8
B
328 336Right-handed alpha
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There are 8 sheets in PDB entry 9TI1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 16first strand
Strand 2
A
19 21anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
74 77parallel
Strand 3
A
100 102parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 37first strand
Strand 2
A
282 283parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 106first strand
Strand 2
A
144 148parallel
Strand 3
A
175 178parallel
Strand 4
A
203 205parallel
Strand 5
A
226 229parallel
Strand 6
A
273 275parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 16first strand
Strand 2
B
19 22anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 33first strand
Strand 2
B
74 77parallel
Strand 3
B
100 102parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 37first strand
Strand 2
B
282 283parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 106first strand
Strand 2
B
144 148parallel
Strand 3
B
175 178parallel
Strand 4
B
203 205parallel
Strand 5
B
226 229parallel
Strand 6
B
273 275parallel
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