Analysis of interatomic Contacts of Structural Units in PDB entry:
9TID


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9TID entry

There are 19 chains in PDB entry 9TID (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 2ILE 310
B
PRO 143ILE 295
C
MET 1LEU 641
D
ASN 2ALA 172
E
ASN 2ALA 172
F
PRO 2SER 262
G
PRO 2SER 262
H
ARG 2SER 213
I
ARG 2VAL 214
J
MET 1LYS 348
K
MET 1LYS 348
L
MET 1LYS 348
M
MET 1LYS 348
N
ALA 2SER 180
O
ALA 2SER 180
P
ILE 568LYS 581
Q
ILE 11VAL 20
R
ILE 568LYS 581
S
ILE 11VAL 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are139 helices in PDB entry 9TID. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
17 22Right-handed 310
Helix 2
AA2
A
96 98Right-handed 310
Helix 3
AA3
A
110 117Right-handed alpha
Helix 4
AA4
A
129 137Right-handed alpha
Helix 5
AA5
A
175 179Right-handed 310
Helix 6
AA6
A
191 195Right-handed 310
Helix 7
AA7
B
144 155Right-handed alpha
Helix 8
AA8
B
156 159Right-handed 310
Helix 9
AA9
B
173 177Right-handed 310
Helix 10
AB1
B
184 195Right-handed alpha
Helix 11
AB2
B
207 212Right-handed alpha
Helix 12
AB3
B
226 232Right-handed 310
Helix 13
AB4
B
276 279Right-handed 310
Helix 14
AB5
C
31 38Right-handed alpha
Helix 15
AB6
C
87 92Right-handed alpha
Helix 16
AB7
C
110 113Right-handed 310
Helix 17
AB8
C
125 131Right-handed alpha
Helix 18
AB9
C
164 177Right-handed alpha
Helix 19
AC1
C
178 180Right-handed 310
Helix 20
AC2
C
191 195Right-handed alpha
Helix 21
AC3
C
223 232Right-handed alpha
Helix 22
AC4
C
260 267Right-handed alpha
Helix 23
AC5
C
315 322Right-handed alpha
Helix 24
AC6
C
358 370Right-handed alpha
Helix 25
AC7
C
370 377Right-handed alpha
Helix 26
AC8
C
377 389Right-handed alpha
Helix 27
AC9
C
393 408Right-handed alpha
Helix 28
AD1
C
411 420Right-handed alpha
Helix 29
AD2
C
422 426Right-handed 310
Helix 30
AD3
C
436 448Right-handed alpha
Helix 31
AD4
C
451 456Right-handed alpha
Helix 32
AD5
C
456 472Right-handed alpha
Helix 33
AD6
C
479 494Right-handed alpha
Helix 34
AD7
C
500 510Right-handed alpha
Helix 35
AD8
C
528 541Right-handed alpha
Helix 36
AD9
C
542 545Right-handed 310
Helix 37
AE1
C
608 612Right-handed 310
Helix 38
AE2
C
614 619Right-handed 310
Helix 39
AE3
D
8 16Right-handed alpha
Helix 40
AE4
D
48 60Right-handed alpha
Helix 41
AE5
D
74 81Right-handed alpha
Helix 42
AE6
D
83 88Right-handed alpha
Helix 43
AE7
D
88 111Right-handed alpha
Helix 44
AE8
D
112 119Right-handed 310
Helix 45
AE9
D
120 139Right-handed alpha
Helix 46
AF1
D
144 169Right-handed alpha
Helix 47
AF2
E
8 16Right-handed alpha
Helix 48
AF3
E
48 60Right-handed alpha
Helix 49
AF4
E
74 82Right-handed alpha
Helix 50
AF5
E
83 88Right-handed alpha
Helix 51
AF6
E
88 111Right-handed alpha
Helix 52
AF7
E
112 119Right-handed 310
Helix 53
AF8
E
120 139Right-handed alpha
Helix 54
AF9
E
141 143Right-handed 310
Helix 55
AG1
E
144 169Right-handed alpha
Helix 56
AG2
F
84 101Right-handed alpha
Helix 57
AG3
F
161 165Right-handed 310
Helix 58
AG4
F
175 187Right-handed alpha
Helix 59
AG5
F
189 205Right-handed alpha
Helix 60
AG6
F
242 254Right-handed alpha
Helix 61
AG7
G
84 103Right-handed alpha
Helix 62
AG8
G
161 165Right-handed 310
Helix 63
AG9
G
175 187Right-handed alpha
Helix 64
AH1
G
189 206Right-handed alpha
Helix 65
AH2
G
242 255Right-handed alpha
Helix 66
AH3
H
13 23Right-handed alpha
Helix 67
AH4
H
27 36Right-handed alpha
Helix 68
AH5
H
47 51Right-handed 310
Helix 69
AH6
H
52 56Right-handed 310
Helix 70
AH7
H
67 72Right-handed alpha
Helix 71
AH8
H
73 83Right-handed alpha
Helix 72
AH9
H
86 93Right-handed alpha
Helix 73
AI1
H
101 106Right-handed alpha
Helix 74
AI2
H
107 109Right-handed 310
Helix 75
AI3
H
130 144Right-handed alpha
Helix 76
AI4
H
158 162Right-handed 310
Helix 77
AI5
H
167 184Right-handed alpha
Helix 78
AI6
I
13 23Right-handed alpha
Helix 79
AI7
I
24 26Right-handed 310
Helix 80
AI8
I
27 36Right-handed alpha
Helix 81
AI9
I
45 50Right-handed alpha
Helix 82
AJ1
I
67 72Right-handed alpha
Helix 83
AJ2
I
73 83Right-handed alpha
Helix 84
AJ3
I
86 93Right-handed alpha
Helix 85
AJ4
I
101 108Right-handed alpha
Helix 86
AJ5
I
130 144Right-handed alpha
Helix 87
AJ6
I
158 162Right-handed 310
Helix 88
AJ7
I
167 184Right-handed alpha
Helix 89
AJ8
J
5 21Right-handed alpha
Helix 90
AJ9
J
31 68Right-handed alpha
Helix 91
AK1
J
138 141Right-handed 310
Helix 92
AK2
J
174 188Right-handed alpha
Helix 93
AK3
J
193 203Right-handed alpha
Helix 94
AK4
J
231 243Right-handed alpha
Helix 95
AK5
J
244 246Right-handed 310
Helix 96
AK6
J
277 294Right-handed alpha
Helix 97
AK7
J
302 312Right-handed alpha
Helix 98
AK8
K
5 21Right-handed alpha
Helix 99
AK9
K
31 67Right-handed alpha
Helix 100
AL1
K
137 141Right-handed 310
Helix 101
AL2
K
174 188Right-handed alpha
Helix 102
AL3
K
193 203Right-handed alpha
Helix 103
AL4
K
231 243Right-handed alpha
Helix 104
AL5
K
272 276Right-handed 310
Helix 105
AL6
K
277 293Right-handed alpha
Helix 106
AL7
K
302 314Right-handed alpha
Helix 107
AL8
L
5 21Right-handed alpha
Helix 108
AL9
L
31 62Right-handed alpha
Helix 109
AM1
L
63 68Right-handed 310
Helix 110
AM2
L
137 141Right-handed 310
Helix 111
AM3
L
174 188Right-handed alpha
Helix 112
AM4
L
193 203Right-handed alpha
Helix 113
AM5
L
231 243Right-handed alpha
Helix 114
AM6
L
272 276Right-handed 310
Helix 115
AM7
L
277 293Right-handed alpha
Helix 116
AM8
L
302 312Right-handed alpha
Helix 117
AM9
M
5 21Right-handed alpha
Helix 118
AN1
M
31 62Right-handed alpha
Helix 119
AN2
M
63 68Right-handed 310
Helix 120
AN3
M
136 141Right-handed 310
Helix 121
AN4
M
174 188Right-handed alpha
Helix 122
AN5
M
193 202Right-handed alpha
Helix 123
AN6
M
231 243Right-handed alpha
Helix 124
AN7
M
272 276Right-handed 310
Helix 125
AN8
M
277 294Right-handed alpha
Helix 126
AN9
M
302 312Right-handed alpha
Helix 127
AO1
N
3 8Right-handed alpha
Helix 128
AO2
N
23 46Right-handed alpha
Helix 129
AO3
N
57 68Right-handed alpha
Helix 130
AO4
N
76 89Right-handed alpha
Helix 131
AO5
N
94 106Right-handed alpha
Helix 132
AO6
N
157 164Right-handed alpha
Helix 133
AO7
O
3 8Right-handed alpha
Helix 134
AO8
O
23 46Right-handed alpha
Helix 135
AO9
O
47 51Right-handed 310
Helix 136
AP1
O
57 68Right-handed alpha
Helix 137
AP2
O
76 88Right-handed alpha
Helix 138
AP3
O
94 107Right-handed alpha
Helix 139
AP4
O
157 166Right-handed alpha
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There are 46 sheets in PDB entry 9TID. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
48 50first strand
Strand 2
A
40 45anti-parallel
Strand 3
A
27 35anti-parallel
Strand 4
A
89 94anti-parallel
Strand 5
A
102 108anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
69 71first strand
Strand 2
A
77 79anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
139 142first strand
Strand 2
A
148 151anti-parallel
Strand 3
A
157 160anti-parallel
Strand 4
A
166 169anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
212 216first strand
Strand 2
A
229 235anti-parallel
Strand 3
A
241 247anti-parallel
Strand 4
A
252 258anti-parallel
Strand 5
A
264 269anti-parallel
Strand 6
A
281 286anti-parallel
Strand 7
A
292 296anti-parallel
Strand 8
A
300 304anti-parallel
Strand 9
A
307 309anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
162 163first strand
Strand 2
B
181 182parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
215 219first strand
Strand 2
B
282 289anti-parallel
Strand 3
B
237 240anti-parallel
Strand 4
B
246 250anti-parallel
Strand 5
B
255 258anti-parallel
Strand 6
B
271 274anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
3 5first strand
Strand 2
G
53 60parallel
Strand 3
G
42 48anti-parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
8 14first strand
Strand 2
C
74 80anti-parallel
Strand 3
C
94 109anti-parallel
Strand 4
C
114 122anti-parallel
Strand 5
C
54 60anti-parallel
Strand 6
C
39 47anti-parallel
Strand 7
C
574 588anti-parallel
Strand 8
C
564 569anti-parallel
Strand 9
C
269 273parallel
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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
8 14first strand
Strand 2
C
74 80anti-parallel
Strand 3
C
94 109anti-parallel
Strand 4
C
114 122anti-parallel
Strand 5
C
54 60anti-parallel
Strand 6
C
39 47anti-parallel
Strand 7
C
574 588anti-parallel
Strand 8
C
592 604anti-parallel
Strand 9
C
547 554anti-parallel
Strand 10
C
277 284anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
132 133first strand
Strand 2
C
221 222anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
140 141first strand
Strand 2
K
149 150anti-parallel
Strand 3
K
100 102anti-parallel
Strand 4
K
112 113anti-parallel
Strand 5
K
126 133anti-parallel
Strand 6
K
78 85anti-parallel
Strand 7
K
157 161anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
147 148first strand
Strand 2
J
93 95parallel
Strand 3
J
118 120anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
159 162first strand
Strand 2
C
211 214anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
184 185first strand
Strand 2
C
189 190anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
196 197first strand
Strand 2
C
250 256parallel
Strand 3
C
236 242anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
326 331first strand
Strand 2
C
292 297parallel
Strand 3
C
313 314anti-parallel
Strand 4
C
626 627anti-parallel
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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
24 28first strand
Strand 2
F
14 18anti-parallel
Strand 3
F
113 117anti-parallel
Strand 4
F
122 138anti-parallel
Strand 5
F
146 156anti-parallel
Strand 6
F
64 70anti-parallel
Strand 7
F
35 39anti-parallel
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There are 11 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
24 28first strand
Strand 2
F
14 18anti-parallel
Strand 3
F
113 117anti-parallel
Strand 4
F
122 138anti-parallel
Strand 5
G
35 40anti-parallel
Strand 6
G
64 71anti-parallel
Strand 7
G
145 156anti-parallel
Strand 8
G
122 136anti-parallel
Strand 9
G
113 117anti-parallel
Strand 10
G
14 18anti-parallel
Strand 11
G
24 28anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
42 48first strand
Strand 2
F
53 60anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
76 77first strand
Strand 2
F
82 83anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
76 77first strand
Strand 2
G
82 83anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
3 7first strand
Strand 2
H
62 66anti-parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
42 43first strand
Strand 2
H
57 58parallel
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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
94 96first strand
Strand 2
H
127 129anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
191 199first strand
Strand 2
H
202 210anti-parallel
Strand 3
P
573 581parallel
Strand 4
Q
15 19parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
3 7first strand
Strand 2
I
62 66anti-parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
42 43first strand
Strand 2
I
57 58parallel
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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
94 96first strand
Strand 2
I
127 129anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
188 199first strand
Strand 2
I
202 211anti-parallel
Strand 3
R
573 581parallel
Strand 4
S
15 19parallel
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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
149 150first strand
Strand 2
J
100 102anti-parallel
Strand 3
J
112 113anti-parallel
Strand 4
J
126 136anti-parallel
Strand 5
J
76 85anti-parallel
Strand 6
J
157 161anti-parallel
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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
209 215first strand
Strand 2
J
218 224anti-parallel
Strand 3
J
251 254parallel
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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
318 324first strand
Strand 2
J
258 270anti-parallel
Strand 3
J
336 346parallel
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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
93 95first strand
Strand 2
K
118 120anti-parallel
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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
209 215first strand
Strand 2
K
218 224anti-parallel
Strand 3
K
251 254parallel
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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
258 262first strand
Strand 2
K
336 340parallel
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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
318 323first strand
Strand 2
K
266 270anti-parallel
Strand 3
K
345 347parallel
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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
149 150first strand
Strand 2
L
100 102anti-parallel
Strand 3
L
111 113anti-parallel
Strand 4
L
126 133anti-parallel
Strand 5
L
78 85anti-parallel
Strand 6
L
157 161anti-parallel
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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
93 95first strand
Strand 2
L
118 120anti-parallel
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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
209 215first strand
Strand 2
L
218 224anti-parallel
Strand 3
L
251 255parallel
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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
318 323first strand
Strand 2
L
258 270anti-parallel
Strand 3
L
336 347parallel
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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
149 150first strand
Strand 2
M
100 102anti-parallel
Strand 3
M
112 113anti-parallel
Strand 4
M
126 133anti-parallel
Strand 5
M
78 85anti-parallel
Strand 6
M
157 161anti-parallel
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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
93 95first strand
Strand 2
M
118 120anti-parallel
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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
210 215first strand
Strand 2
M
218 223anti-parallel
Strand 3
M
251 255parallel
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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
318 323first strand
Strand 2
M
258 270anti-parallel
Strand 3
M
336 347parallel
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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
113 116first strand
Strand 2
N
145 150anti-parallel
Strand 3
N
171 176parallel
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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
113 116first strand
Strand 2
O
145 150anti-parallel
Strand 3
O
171 176parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il