Analysis of interatomic Contacts of Structural Units in PDB entry:
9TIH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9TIH entry

There are 10 chains in PDB entry 9TIH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 4	SER 941
B	ASN 4	ASN 171
C	VAL 23	VAL 173
D	ILE 3	GLN 168
E	ALA 2	VAL 173
F	ALA 4	VAL 173
G	LEU 194	ARG 465
H	SER 35	GLU 406
I	LYS 38	GLU 406
J	ASN 46	LYS 404

There are 31 helices in PDB entry 9TIH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	18	Right-handed 310
Helix 2	AA2	A	32	55	Right-handed alpha
Helix 3	AA3	A	116	124	Right-handed 310
Helix 4	AA4	A	132	136	Right-handed 310
Helix 5	AA5	A	849	851	Right-handed 310
Helix 6	AA6	B	15	18	Right-handed 310
Helix 7	AA7	B	32	55	Right-handed alpha
Helix 8	AA8	B	120	124	Right-handed 310
Helix 9	AA9	C	138	142	Right-handed 310
Helix 10	AB1	D	15	18	Right-handed 310
Helix 11	AB2	D	32	53	Right-handed alpha
Helix 12	AB3	D	120	124	Right-handed 310
Helix 13	AB4	E	5	18	Right-handed alpha
Helix 14	AB5	E	19	22	Right-handed 310
Helix 15	AB6	E	68	73	Right-handed alpha
Helix 16	AB7	E	89	91	Right-handed 310
Helix 17	AB8	E	92	97	Right-handed alpha
Helix 18	AB9	E	138	140	Right-handed 310
Helix 19	AC1	F	5	19	Right-handed alpha
Helix 20	AC2	F	20	22	Right-handed 310
Helix 21	AC3	F	92	97	Right-handed alpha
Helix 22	AC4	F	138	140	Right-handed 310
Helix 23	AC5	G	290	296	Right-handed alpha
Helix 24	AC6	G	324	332	Right-handed alpha
Helix 25	AC7	G	341	351	Right-handed alpha
Helix 26	AC8	H	47	52	Right-handed alpha
Helix 27	AC9	I	47	51	Right-handed 310
Helix 28	AD1	I	129	133	Right-handed 310
Helix 29	AD2	I	148	151	Right-handed 310
Helix 30	AD3	J	47	51	Right-handed 310
Helix 31	AD4	J	129	133	Right-handed 310

There are 35 sheets in PDB entry 9TIH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	24	first strand
Strand 2	B	139	142	anti-parallel
Strand 3	B	113	115	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	63	first strand
Strand 2	A	79	83	anti-parallel
Strand 3	A	86	90	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	69	first strand
Strand 2	A	73	76	anti-parallel
Strand 3	A	95	97	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	165	first strand
Strand 2	A	155	161	anti-parallel
Strand 3	A	103	115	anti-parallel
Strand 4	A	139	148	anti-parallel
Strand 5	D	20	24	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	569	573	first strand
Strand 2	A	937	940	anti-parallel
Strand 3	A	804	808	anti-parallel
Strand 4	A	864	871	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	582	first strand
Strand 2	A	889	894	anti-parallel
Strand 3	A	813	815	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	582	first strand
Strand 2	A	889	894	anti-parallel
Strand 3	A	932	934	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	836	847	first strand
Strand 2	A	822	830	anti-parallel
Strand 3	A	876	883	anti-parallel
Strand 4	A	794	799	anti-parallel
Strand 5	A	917	919	anti-parallel
Strand 6	A	927	929	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	897	899	first strand
Strand 2	A	902	907	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	24	first strand
Strand 2	D	139	142	anti-parallel
Strand 3	D	113	114	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	63	first strand
Strand 2	B	79	82	anti-parallel
Strand 3	B	87	90	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	73	76	anti-parallel
Strand 3	B	95	97	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	149	first strand
Strand 2	B	105	108	anti-parallel
Strand 3	B	155	161	anti-parallel
Strand 4	B	164	165	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	137	first strand
Strand 2	C	54	57	anti-parallel
Strand 3	C	24	28	anti-parallel
Strand 4	C	119	124	anti-parallel
Strand 5	C	147	153	anti-parallel

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There are 11 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	80	first strand
Strand 2	C	83	87	anti-parallel
Strand 3	C	60	67	anti-parallel
Strand 4	C	101	108	anti-parallel
Strand 5	C	164	171	anti-parallel
Strand 6	G	197	203	anti-parallel
Strand 7	F	163	172	parallel
Strand 8	F	100	108	anti-parallel
Strand 9	F	60	67	anti-parallel
Strand 10	F	83	88	anti-parallel
Strand 11	F	77	80	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	80	first strand
Strand 2	C	83	87	anti-parallel
Strand 3	C	60	67	anti-parallel
Strand 4	C	101	108	anti-parallel
Strand 5	C	164	171	anti-parallel
Strand 6	G	197	203	anti-parallel
Strand 7	F	163	172	parallel
Strand 8	G	206	207	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	63	first strand
Strand 2	D	79	81	anti-parallel
Strand 3	D	88	90	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	67	first strand
Strand 2	D	73	76	anti-parallel
Strand 3	D	95	97	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	149	first strand
Strand 2	D	103	110	anti-parallel
Strand 3	D	155	161	anti-parallel
Strand 4	D	164	165	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	4	first strand
Strand 2	F	147	153	anti-parallel
Strand 3	F	119	124	anti-parallel
Strand 4	F	24	27	anti-parallel
Strand 5	F	54	57	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	57	first strand
Strand 2	E	24	28	anti-parallel
Strand 3	E	119	123	anti-parallel
Strand 4	E	148	153	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	80	first strand
Strand 2	E	83	88	anti-parallel
Strand 3	E	63	65	anti-parallel
Strand 4	E	100	107	anti-parallel
Strand 5	E	164	171	anti-parallel
Strand 6	G	457	464	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	128	first strand
Strand 2	E	142	144	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	128	first strand
Strand 2	F	142	144	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	216	217	first strand
Strand 2	G	428	440	anti-parallel
Strand 3	G	305	310	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	216	217	first strand
Strand 2	G	428	440	anti-parallel
Strand 3	G	353	361	anti-parallel
Strand 4	G	396	397	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	287	288	first strand
Strand 2	G	259	263	anti-parallel
Strand 3	G	316	323	anti-parallel
Strand 4	G	414	422	anti-parallel
Strand 5	G	369	377	anti-parallel
Strand 6	G	382	391	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	38	41	first strand
Strand 2	H	56	61	parallel
Strand 3	H	76	79	anti-parallel
Strand 4	H	87	88	anti-parallel
Strand 5	H	99	102	anti-parallel
Strand 6	H	112	113	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	137	141	first strand
Strand 2	H	154	160	anti-parallel
Strand 3	H	167	173	anti-parallel
Strand 4	H	179	183	anti-parallel
Strand 5	H	399	401	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	39	41	first strand
Strand 2	I	57	61	parallel
Strand 3	I	74	82	anti-parallel
Strand 4	I	85	92	anti-parallel
Strand 5	I	99	104	anti-parallel
Strand 6	I	107	108	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	39	41	first strand
Strand 2	I	57	61	parallel
Strand 3	I	74	82	anti-parallel
Strand 4	I	85	92	anti-parallel
Strand 5	I	99	104	anti-parallel
Strand 6	I	112	113	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	124	128	first strand
Strand 2	I	137	143	parallel
Strand 3	I	153	160	anti-parallel
Strand 4	I	167	173	anti-parallel
Strand 5	I	178	183	anti-parallel
Strand 6	I	401	402	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	58	60	first strand
Strand 2	J	74	78	anti-parallel
Strand 3	J	85	91	anti-parallel
Strand 4	J	99	104	anti-parallel
Strand 5	J	107	108	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	58	60	first strand
Strand 2	J	74	78	anti-parallel
Strand 3	J	85	91	anti-parallel
Strand 4	J	99	104	anti-parallel
Strand 5	J	112	113	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	124	128	first strand
Strand 2	J	137	143	parallel
Strand 3	J	154	160	anti-parallel
Strand 4	J	167	173	anti-parallel
Strand 5	J	179	183	anti-parallel
Strand 6	J	399	401	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9TIH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9TIH