Analysis of interatomic Contacts of Structural Units in PDB entry:
9TII

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9TII entry

There are 10 chains in PDB entry 9TII (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 455	ASN 752
B	MET 1	LYS 50
C	MET 1	LYS 50
D	MET 1	LYS 50
E	ALA 2	VAL 173
H	ALA 2	VAL 173
I	ALA 2	VAL 173
J	ALA 2	VAL 173
K	ALA 2	VAL 173
L	ALA 2	VAL 173

There are 32 helices in PDB entry 9TII. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	567	575	Right-handed alpha
Helix 2	AA2	A	688	692	Right-handed 310
Helix 3	AA3	B	13	28	Right-handed alpha
Helix 4	AA4	B	33	47	Right-handed alpha
Helix 5	AA5	C	13	28	Right-handed alpha
Helix 6	AA6	C	33	48	Right-handed alpha
Helix 7	AA7	D	13	28	Right-handed alpha
Helix 8	AA8	D	33	46	Right-handed alpha
Helix 9	AA9	E	5	18	Right-handed alpha
Helix 10	AB1	E	19	22	Right-handed 310
Helix 11	AB2	E	68	73	Right-handed alpha
Helix 12	AB3	E	92	97	Right-handed 310
Helix 13	AB4	E	138	142	Right-handed 310
Helix 14	AB5	H	5	19	Right-handed alpha
Helix 15	AB6	H	20	22	Right-handed 310
Helix 16	AB7	H	92	97	Right-handed 310
Helix 17	AB8	H	138	142	Right-handed 310
Helix 18	AB9	I	5	19	Right-handed alpha
Helix 19	AC1	I	20	22	Right-handed 310
Helix 20	AC2	I	92	97	Right-handed 310
Helix 21	AC3	I	138	142	Right-handed 310
Helix 22	AC4	J	5	19	Right-handed alpha
Helix 23	AC5	J	20	22	Right-handed 310
Helix 24	AC6	J	92	97	Right-handed 310
Helix 25	AC7	J	138	142	Right-handed 310
Helix 26	AC8	K	5	19	Right-handed alpha
Helix 27	AC9	K	92	97	Right-handed 310
Helix 28	AD1	K	138	142	Right-handed 310
Helix 29	AD2	L	5	19	Right-handed alpha
Helix 30	AD3	L	20	22	Right-handed 310
Helix 31	AD4	L	92	97	Right-handed 310
Helix 32	AD5	L	138	142	Right-handed 310

There are 16 sheets in PDB entry 9TII. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	469	first strand
Strand 2	H	164	171	parallel
Strand 3	H	100	107	anti-parallel
Strand 4	H	60	66	anti-parallel
Strand 5	H	83	88	anti-parallel
Strand 6	H	78	80	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	469	first strand
Strand 2	H	164	171	parallel
Strand 3	A	457	463	parallel
Strand 4	J	165	171	anti-parallel
Strand 5	J	100	107	anti-parallel
Strand 6	J	60	66	anti-parallel
Strand 7	J	83	88	anti-parallel
Strand 8	J	77	80	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	522	525	first strand
Strand 2	A	695	706	anti-parallel
Strand 3	A	491	500	anti-parallel
Strand 4	A	720	728	anti-parallel
Strand 5	A	735	743	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	513	first strand
Strand 2	A	711	716	anti-parallel
Strand 3	A	746	751	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	555	558	first strand
Strand 2	A	668	678	anti-parallel
Strand 3	A	580	591	anti-parallel
Strand 4	A	629	637	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	566	first strand
Strand 2	A	644	654	anti-parallel
Strand 3	A	597	609	anti-parallel
Strand 4	A	613	621	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	4	first strand
Strand 2	H	148	153	anti-parallel
Strand 3	H	119	123	anti-parallel
Strand 4	H	24	28	anti-parallel
Strand 5	H	52	57	anti-parallel
Strand 6	H	136	137	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	136	137	first strand
Strand 2	E	52	57	anti-parallel
Strand 3	E	24	28	anti-parallel
Strand 4	E	117	123	anti-parallel
Strand 5	E	148	157	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	80	first strand
Strand 2	E	83	88	anti-parallel
Strand 3	E	60	65	anti-parallel
Strand 4	E	100	107	anti-parallel
Strand 5	E	165	172	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	4	first strand
Strand 2	L	148	157	anti-parallel
Strand 3	L	117	123	anti-parallel
Strand 4	L	24	28	anti-parallel
Strand 5	L	52	57	anti-parallel
Strand 6	L	136	137	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	136	137	first strand
Strand 2	I	52	57	anti-parallel
Strand 3	I	24	28	anti-parallel
Strand 4	I	119	123	anti-parallel
Strand 5	I	148	153	anti-parallel
Strand 6	L	3	4	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	78	80	first strand
Strand 2	I	83	88	anti-parallel
Strand 3	I	60	66	anti-parallel
Strand 4	I	101	107	anti-parallel
Strand 5	I	165	171	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	136	137	first strand
Strand 2	J	52	57	anti-parallel
Strand 3	J	24	28	anti-parallel
Strand 4	J	119	123	anti-parallel
Strand 5	J	148	153	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	136	137	first strand
Strand 2	K	52	57	anti-parallel
Strand 3	K	24	28	anti-parallel
Strand 4	K	117	123	anti-parallel
Strand 5	K	148	157	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	77	80	first strand
Strand 2	K	83	88	anti-parallel
Strand 3	K	60	65	anti-parallel
Strand 4	K	100	108	anti-parallel
Strand 5	K	164	171	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	77	80	first strand
Strand 2	L	83	88	anti-parallel
Strand 3	L	60	66	anti-parallel
Strand 4	L	100	107	anti-parallel
Strand 5	L	165	171	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9TII

Analysis of interatomic Contacts of Structural Units in PDB entry:
9TII