Analysis of interatomic Contacts of Structural Units in PDB entry:
9TIN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9TIN entry

There are 6 chains in PDB entry 9TIN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4ASN 171
B
 ASN 4ASN 171
C
 ASN 4ASN 171
D
 ASN 95GLN 201
E
 ALA 2VAL 173
F
 ALA 2VAL 173
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 9TIN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 53Right-handed alpha
Helix 2
AA2
A
120 124Right-handed 310
Helix 3
AA3
B
8 12Right-handed 310
Helix 4
AA4
B
15 18Right-handed 310
Helix 5
AA5
B
32 55Right-handed alpha
Helix 6
AA6
B
116 124Right-handed 310
Helix 7
AA7
C
15 18Right-handed 310
Helix 8
AA8
C
32 53Right-handed alpha
Helix 9
AA9
C
120 124Right-handed 310
Helix 10
AB1
D
96 106Right-handed alpha
Helix 11
AB2
D
117 122Right-handed 310
Helix 12
AB3
D
156 166Right-handed alpha
Helix 13
AB4
E
5 19Right-handed alpha
Helix 14
AB5
E
89 91Right-handed 310
Helix 15
AB6
E
92 97Right-handed alpha
Helix 16
AB7
E
138 140Right-handed 310
Helix 17
AB8
F
5 19Right-handed alpha
Helix 18
AB9
F
20 22Right-handed 310
Helix 19
AC1
F
89 97Right-handed alpha
Helix 20
AC2
F
130 132Right-handed 310
Helix 21
AC3
F
138 140Right-handed 310
Back to top of page

There are 16 sheets in PDB entry 9TIN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
B
139 149anti-parallel
Strand 3
B
103 115anti-parallel
Strand 4
B
155 161anti-parallel
Strand 5
B
164 165anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
79 83anti-parallel
Strand 3
A
86 90anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
73 76anti-parallel
Strand 3
A
95 97anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
155 161anti-parallel
Strand 3
A
103 115anti-parallel
Strand 4
A
139 148anti-parallel
Strand 5
C
20 24anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 24first strand
Strand 2
C
139 148anti-parallel
Strand 3
C
103 115anti-parallel
Strand 4
C
155 161anti-parallel
Strand 5
C
164 165anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 63first strand
Strand 2
B
79 83anti-parallel
Strand 3
B
86 90anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 68first strand
Strand 2
B
73 76anti-parallel
Strand 3
B
95 97anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 63first strand
Strand 2
C
79 83anti-parallel
Strand 3
C
86 90anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 68first strand
Strand 2
C
73 76anti-parallel
Strand 3
C
95 97anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
114 116first strand
Strand 2
D
145 150anti-parallel
Strand 3
D
171 177parallel
Strand 4
E
163 172parallel
Strand 5
D
188 189parallel
Back to list of sheets
Back to top of page

There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
114 116first strand
Strand 2
D
145 150anti-parallel
Strand 3
D
171 177parallel
Strand 4
E
163 172parallel
Strand 5
E
100 108anti-parallel
Strand 6
E
60 66anti-parallel
Strand 7
E
83 88anti-parallel
Strand 8
E
77 80anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
197 200first strand
Strand 2
F
164 171anti-parallel
Strand 3
F
100 108anti-parallel
Strand 4
F
63 67anti-parallel
Strand 5
F
83 88anti-parallel
Strand 6
F
79 80anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 4first strand
Strand 2
F
147 153anti-parallel
Strand 3
F
119 124anti-parallel
Strand 4
F
24 28anti-parallel
Strand 5
F
54 57anti-parallel
Strand 6
F
136 137anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
136 137first strand
Strand 2
E
52 57anti-parallel
Strand 3
E
23 28anti-parallel
Strand 4
E
119 124anti-parallel
Strand 5
E
147 153anti-parallel
Strand 6
F
3 4anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
127 128first strand
Strand 2
E
142 144anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
127 128first strand
Strand 2
F
142 144anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il