Analysis of interatomic Contacts of Structural Units in PDB entry:
9TJX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9TJX entry

There are 32 chains in PDB entry 9TJX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 8	ILE 177
B	LEU 8	ILE 177
C	GLN 9	ILE 177
D	ARG 10	ILE 177
L	ALA 1	LEU 5
L	LEU 8	LEU 13
L	ARG 15	ARG 15
L	CYS 17	LYS 18
L	GLN 21	PHE 24
L	ALA 27	ARG 28
L	ILE 30	LYS 32
E	ALA 1	LEU 5
E	LEU 8	LEU 13
E	ARG 15	ARG 15
E	CYS 17	LYS 18
E	GLN 21	PHE 24
E	ALA 27	ARG 28
E	ILE 30	LYS 32
F	ALA 1	LEU 5
F	LEU 8	LEU 13
F	ARG 15	ARG 15
F	CYS 17	LYS 18
F	GLN 21	PHE 24
F	ALA 27	ARG 28
F	ILE 30	LYS 32
R	ALA 1	LEU 5
R	LEU 8	LEU 13
R	ARG 15	ARG 15
R	CYS 17	LYS 18
R	GLN 21	PHE 24
R	ALA 27	ARG 28
R	ILE 30	LYS 32

There are 28 helices in PDB entry 9TJX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	88	Right-handed alpha
Helix 2	AA2	A	141	152	Right-handed alpha
Helix 3	AA3	A	158	167	Right-handed alpha
Helix 4	AA4	A	167	177	Right-handed alpha
Helix 5	AA5	B	58	88	Right-handed alpha
Helix 6	AA6	B	141	152	Right-handed alpha
Helix 7	AA7	B	158	167	Right-handed alpha
Helix 8	AA8	B	167	177	Right-handed alpha
Helix 9	AA9	C	58	88	Right-handed alpha
Helix 10	AB1	C	141	152	Right-handed alpha
Helix 11	AB2	C	154	167	Right-handed alpha
Helix 12	AB3	C	167	177	Right-handed alpha
Helix 13	AB4	D	58	88	Right-handed alpha
Helix 14	AB5	D	141	152	Right-handed alpha
Helix 15	AB6	D	158	167	Right-handed alpha
Helix 16	AB7	D	167	177	Right-handed alpha
Helix 17	AB8	L	5	9	Right-handed 310
Helix 18	AB9	L	12	18	Right-handed alpha
Helix 19	AC1	L	23	31	Right-handed alpha
Helix 20	AC2	E	5	9	Right-handed 310
Helix 21	AC3	E	12	17	Right-handed alpha
Helix 22	AC4	E	23	31	Right-handed alpha
Helix 23	AC5	F	5	9	Right-handed 310
Helix 24	AC6	F	12	18	Right-handed alpha
Helix 25	AC7	F	23	31	Right-handed alpha
Helix 26	AC8	R	5	9	Right-handed 310
Helix 27	AC9	R	12	18	Right-handed alpha
Helix 28	AD1	R	23	31	Right-handed alpha

There are 4 sheets in PDB entry 9TJX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	52	first strand
Strand 2	A	36	44	anti-parallel
Strand 3	A	24	33	anti-parallel
Strand 4	A	9	21	anti-parallel
Strand 5	A	93	103	anti-parallel
Strand 6	A	111	118	anti-parallel
Strand 7	A	121	127	anti-parallel
Strand 8	A	132	135	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	52	first strand
Strand 2	B	36	44	anti-parallel
Strand 3	B	24	33	anti-parallel
Strand 4	B	9	21	anti-parallel
Strand 5	B	93	103	anti-parallel
Strand 6	B	111	118	anti-parallel
Strand 7	B	121	127	anti-parallel
Strand 8	B	132	135	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	52	first strand
Strand 2	C	36	44	anti-parallel
Strand 3	C	24	33	anti-parallel
Strand 4	C	10	21	anti-parallel
Strand 5	C	94	102	anti-parallel
Strand 6	C	111	118	anti-parallel
Strand 7	C	121	127	anti-parallel
Strand 8	C	132	135	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	52	first strand
Strand 2	D	36	44	anti-parallel
Strand 3	D	24	33	anti-parallel
Strand 4	D	11	21	anti-parallel
Strand 5	D	93	102	anti-parallel
Strand 6	D	111	118	anti-parallel
Strand 7	D	121	127	anti-parallel
Strand 8	D	132	135	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9TJX

Analysis of interatomic Contacts of Structural Units in PDB entry:
9TJX