Analysis of interatomic Contacts of Structural Units in PDB entry:
9TM6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9TM6 entry

There are 3 chains in PDB entry 9TM6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 244ILE 264
A
 ALA 266TYR 929
R
 G 2 C 31
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9TM6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
246 253Right-handed alpha
Helix 2
AA2
A
253 258Right-handed alpha
Helix 3
AA3
A
271 286Right-handed alpha
Helix 4
AA4
A
301 317Right-handed alpha
Helix 5
AA5
A
318 320Right-handed 310
Helix 6
AA6
A
330 334Right-handed 310
Helix 7
AA7
A
335 343Right-handed alpha
Helix 8
AA8
A
349 359Right-handed alpha
Helix 9
AA9
A
364 368Right-handed 310
Helix 10
AB1
A
376 379Right-handed 310
Helix 11
AB2
A
383 398Right-handed alpha
Helix 12
AB3
A
420 435Right-handed alpha
Helix 13
AB4
A
446 454Right-handed alpha
Helix 14
AB5
A
470 491Right-handed alpha
Helix 15
AB6
A
506 522Right-handed alpha
Helix 16
AB7
A
527 558Right-handed alpha
Helix 17
AB8
A
559 577Right-handed alpha
Helix 18
AB9
A
580 601Right-handed alpha
Helix 19
AC1
A
608 625Right-handed alpha
Helix 20
AC2
A
636 650Right-handed alpha
Helix 21
AC3
A
651 655Right-handed 310
Helix 22
AC4
A
674 688Right-handed alpha
Helix 23
AC5
A
698 701Right-handed 310
Helix 24
AC6
A
720 729Right-handed alpha
Helix 25
AC7
A
744 769Right-handed alpha
Helix 26
AC8
A
772 794Right-handed alpha
Helix 27
AC9
A
836 841Right-handed alpha
Helix 28
AD1
A
909 917Right-handed 310
Helix 29
AD2
A
921 927Right-handed alpha
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There are 5 sheets in PDB entry 9TM6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 326first strand
Strand 2
A
345 348parallel
Strand 3
A
295 298parallel
Strand 4
A
370 374parallel
Strand 5
A
405 410parallel
Strand 6
A
262 265parallel
Strand 7
A
439 441parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 463first strand
Strand 2
A
737 742parallel
Strand 3
A
711 715parallel
Strand 4
A
630 633parallel
Strand 5
A
693 696parallel
Strand 6
A
658 661parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
817 820first strand
Strand 2
A
807 811anti-parallel
Strand 3
A
894 898anti-parallel
Strand 4
A
904 905anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
843 847first strand
Strand 2
A
857 865anti-parallel
Strand 3
A
853 854anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
843 847first strand
Strand 2
A
857 865anti-parallel
Strand 3
A
873 880anti-parallel
Strand 4
A
883 889anti-parallel
Strand 5
A
831 834anti-parallel
Strand 6
A
824 827anti-parallel
Strand 7
A
918 919parallel
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