Analysis of interatomic Contacts of Structural Units in PDB entry:
9TMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9TMK entry

There are 2 chains in PDB entry 9TMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 33ASN 297
B
 LEU 227PRO 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 9TMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 47Right-handed alpha
Helix 2
AA2
A
49 61Right-handed alpha
Helix 3
AA3
A
70 76Right-handed alpha
Helix 4
AA4
A
92 96Right-handed 310
Helix 5
AA5
A
112 116Right-handed 310
Helix 6
AA6
A
155 159Right-handed 310
Helix 7
AA7
A
179 183Right-handed 310
Helix 8
AA8
A
201 205Right-handed 310
Helix 9
AA9
B
258 261Right-handed 310
Helix 10
AB1
B
300 302Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 9TMK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
68 69anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
101 103parallel
Strand 3
A
123 125parallel
Strand 4
A
144 146parallel
Strand 5
A
166 168parallel
Strand 6
A
188 190parallel
Strand 7
A
210 219parallel
Strand 8
A
283 296parallel
Strand 9
A
223 224parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
101 103parallel
Strand 3
A
123 125parallel
Strand 4
A
144 146parallel
Strand 5
A
166 168parallel
Strand 6
A
188 190parallel
Strand 7
A
210 219parallel
Strand 8
A
283 296parallel
Strand 9
A
269 280anti-parallel
Strand 10
A
247 248anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 232first strand
Strand 2
A
258 262anti-parallel
Strand 3
A
253 255anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 240first strand
Strand 2
B
243 254anti-parallel
Strand 3
B
263 269anti-parallel
Strand 4
B
294 298anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
279 280first strand
Strand 2
B
283 284anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il