Analysis of interatomic Contacts of Structural Units in PDB entry:
9TP2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9TP2 entry

There is 1 chain in PDB entry 9TP2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 52LEU 458
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9TP2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 64Right-handed alpha
Helix 2
AA2
A
71 76Right-handed alpha
Helix 3
AA3
A
140 142Right-handed 310
Helix 4
AA4
A
143 147Right-handed 310
Helix 5
AA5
A
166 177Right-handed alpha
Helix 6
AA6
A
204 224Right-handed alpha
Helix 7
AA7
A
224 233Right-handed alpha
Helix 8
AA8
A
266 273Right-handed 310
Helix 9
AA9
A
275 285Right-handed alpha
Helix 10
AB1
A
325 327Right-handed 310
Helix 11
AB2
A
328 334Right-handed alpha
Helix 12
AB3
A
341 356Right-handed alpha
Helix 13
AB4
A
395 399Right-handed 310
Helix 14
AB5
A
424 440Right-handed alpha
Helix 15
AB6
A
446 450Right-handed 310
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There are 7 sheets in PDB entry 9TP2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
125 129parallel
Strand 3
A
106 109anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
133 138anti-parallel
Strand 3
A
95 100anti-parallel
Strand 4
A
86 90anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
183 187anti-parallel
Strand 3
A
287 294parallel
Strand 4
A
200 201anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
183 187anti-parallel
Strand 3
A
287 294parallel
Strand 4
A
316 323parallel
Strand 5
A
301 305anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 122first strand
Strand 2
A
112 114anti-parallel
Strand 3
A
156 158anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 370first strand
Strand 2
A
387 388anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 373first strand
Strand 2
A
376 377anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il