Analysis of interatomic Contacts of Structural Units in PDB entry:
9TP6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9TP6 entry

There are 3 chains in PDB entry 9TP6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 24SER 262
B
 GLN 24LEU 263
C
 GLN 24LEU 263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9TP6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 35Right-handed alpha
Helix 2
AA2
A
70 74Right-handed 310
Helix 3
AA3
A
121 126Right-handed alpha
Helix 4
AA4
A
136 141Right-handed 310
Helix 5
AA5
A
144 146Right-handed 310
Helix 6
AA6
A
254 259Right-handed alpha
Helix 7
AA7
B
25 35Right-handed alpha
Helix 8
AA8
B
70 74Right-handed 310
Helix 9
AA9
B
122 128Right-handed alpha
Helix 10
AB1
B
136 141Right-handed alpha
Helix 11
AB2
B
144 146Right-handed 310
Helix 12
AB3
B
249 253Right-handed 310
Helix 13
AB4
B
254 259Right-handed alpha
Helix 14
AB5
C
25 35Right-handed alpha
Helix 15
AB6
C
70 74Right-handed 310
Helix 16
AB7
C
121 125Right-handed 310
Helix 17
AB8
C
129 133Right-handed 310
Helix 18
AB9
C
136 140Right-handed 310
Helix 19
AC1
C
144 146Right-handed 310
Helix 20
AC2
C
255 261Right-handed alpha
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There are 3 sheets in PDB entry 9TP6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
106 109anti-parallel
Strand 3
A
92 97anti-parallel
Strand 4
A
75 84anti-parallel
Strand 5
A
57 69anti-parallel
Strand 6
A
41 51anti-parallel
Strand 7
A
234 244anti-parallel
Strand 8
A
218 228anti-parallel
Strand 9
A
203 215anti-parallel
Strand 10
A
191 197anti-parallel
Strand 11
A
179 185anti-parallel
Strand 12
A
161 170anti-parallel
Strand 13
A
148 158anti-parallel
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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 120first strand
Strand 2
B
106 111anti-parallel
Strand 3
B
92 97anti-parallel
Strand 4
B
75 84anti-parallel
Strand 5
B
57 69anti-parallel
Strand 6
B
41 51anti-parallel
Strand 7
B
234 244anti-parallel
Strand 8
B
218 228anti-parallel
Strand 9
B
203 215anti-parallel
Strand 10
B
191 198anti-parallel
Strand 11
B
177 185anti-parallel
Strand 12
B
161 170anti-parallel
Strand 13
B
148 158anti-parallel
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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
106 110first strand
Strand 2
C
92 97anti-parallel
Strand 3
C
76 84anti-parallel
Strand 4
C
57 67anti-parallel
Strand 5
C
41 51anti-parallel
Strand 6
C
233 244anti-parallel
Strand 7
C
218 228anti-parallel
Strand 8
C
203 215anti-parallel
Strand 9
C
191 197anti-parallel
Strand 10
C
179 185anti-parallel
Strand 11
C
161 170anti-parallel
Strand 12
C
148 158anti-parallel
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