Analysis of interatomic Contacts of Structural Units in PDB entry:
9TP7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9TP7 entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 9TP7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 450	PRO 784
A	PRO 786	GLN 802
B	GLN 450	ALA 728

There are 80 helices in PDB entry 9TP7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	451	461	Right-handed alpha
Helix 2	AA2	A	477	495	Right-handed alpha
Helix 3	AA3	A	514	526	Right-handed alpha
Helix 4	AA4	A	551	566	Right-handed alpha
Helix 5	AA5	A	579	584	Right-handed alpha
Helix 6	AA6	A	587	597	Right-handed alpha
Helix 7	AA7	A	597	613	Right-handed alpha
Helix 8	AA8	A	637	643	Right-handed alpha
Helix 9	AA9	A	649	653	Right-handed 310
Helix 10	AB1	A	654	663	Right-handed alpha
Helix 11	AB2	A	687	698	Right-handed alpha
Helix 12	AB3	A	730	734	Right-handed 310
Helix 13	AB4	A	769	773	Right-handed 310
Helix 14	AB5	A	777	782	Right-handed alpha
Helix 15	AB6	A	793	797	Right-handed 310
Helix 16	AB7	B	451	461	Right-handed alpha
Helix 17	AB8	B	477	494	Right-handed alpha
Helix 18	AB9	B	514	526	Right-handed alpha
Helix 19	AC1	B	551	566	Right-handed alpha
Helix 20	AC2	B	579	584	Right-handed alpha
Helix 21	AC3	B	587	597	Right-handed alpha
Helix 22	AC4	B	597	613	Right-handed alpha
Helix 23	AC5	B	637	643	Right-handed alpha
Helix 24	AC6	B	649	653	Right-handed 310
Helix 25	AC7	B	654	663	Right-handed alpha
Helix 26	AC8	B	687	699	Right-handed alpha
Helix 27	AC9	B	730	734	Right-handed 310
Helix 28	AD1	B	775	782	Right-handed alpha
Helix 29	AD2	C	451	461	Right-handed alpha
Helix 30	AD3	C	477	494	Right-handed alpha
Helix 31	AD4	C	514	526	Right-handed alpha
Helix 32	AD5	C	551	566	Right-handed alpha
Helix 33	AD6	C	579	584	Right-handed alpha
Helix 34	AD7	C	587	597	Right-handed alpha
Helix 35	AD8	C	597	613	Right-handed alpha
Helix 36	AD9	C	637	643	Right-handed alpha
Helix 37	AE1	C	649	653	Right-handed 310
Helix 38	AE2	C	654	663	Right-handed alpha
Helix 39	AE3	C	687	699	Right-handed alpha
Helix 40	AE4	C	730	734	Right-handed 310
Helix 41	AE5	C	775	782	Right-handed alpha
Helix 42	AE6	D	451	461	Right-handed alpha
Helix 43	AE7	D	477	495	Right-handed alpha
Helix 44	AE8	D	514	526	Right-handed alpha
Helix 45	AE9	D	551	566	Right-handed alpha
Helix 46	AF1	D	579	584	Right-handed alpha
Helix 47	AF2	D	587	597	Right-handed alpha
Helix 48	AF3	D	597	613	Right-handed alpha
Helix 49	AF4	D	637	643	Right-handed alpha
Helix 50	AF5	D	649	653	Right-handed 310
Helix 51	AF6	D	654	663	Right-handed alpha
Helix 52	AF7	D	687	699	Right-handed alpha
Helix 53	AF8	D	730	734	Right-handed 310
Helix 54	AF9	D	775	782	Right-handed alpha
Helix 55	AG1	E	451	461	Right-handed alpha
Helix 56	AG2	E	477	494	Right-handed alpha
Helix 57	AG3	E	514	526	Right-handed alpha
Helix 58	AG4	E	551	566	Right-handed alpha
Helix 59	AG5	E	579	584	Right-handed alpha
Helix 60	AG6	E	587	597	Right-handed alpha
Helix 61	AG7	E	597	613	Right-handed alpha
Helix 62	AG8	E	637	643	Right-handed alpha
Helix 63	AG9	E	649	653	Right-handed 310
Helix 64	AH1	E	654	663	Right-handed alpha
Helix 65	AH2	E	687	699	Right-handed alpha
Helix 66	AH3	E	718	720	Right-handed 310
Helix 67	AH4	E	730	734	Right-handed 310
Helix 68	AH5	E	775	782	Right-handed alpha
Helix 69	AH6	F	451	461	Right-handed alpha
Helix 70	AH7	F	477	493	Right-handed alpha
Helix 71	AH8	F	514	526	Right-handed alpha
Helix 72	AH9	F	551	566	Right-handed alpha
Helix 73	AI1	F	579	584	Right-handed alpha
Helix 74	AI2	F	587	597	Right-handed alpha
Helix 75	AI3	F	597	614	Right-handed alpha
Helix 76	AI4	F	637	643	Right-handed alpha
Helix 77	AI5	F	654	663	Right-handed alpha
Helix 78	AI6	F	687	699	Right-handed alpha
Helix 79	AI7	F	730	734	Right-handed 310
Helix 80	AI8	F	775	782	Right-handed alpha

There are 18 sheets in PDB entry 9TP7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	501	first strand
Strand 2	A	618	621	parallel
Strand 3	A	625	628	anti-parallel
Strand 4	A	702	705	parallel
Strand 5	A	722	725	parallel
Strand 6	A	712	717	anti-parallel
Strand 7	A	738	744	parallel
Strand 8	A	505	508	anti-parallel
Strand 9	A	538	541	parallel
Strand 10	A	570	572	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	501	first strand
Strand 2	A	618	621	parallel
Strand 3	A	625	628	anti-parallel
Strand 4	A	702	705	parallel
Strand 5	A	722	725	parallel
Strand 6	A	712	717	anti-parallel
Strand 7	A	738	744	parallel
Strand 8	A	750	755	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	664	665	first strand
Strand 2	A	684	686	parallel
Strand 3	A	674	676	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	498	501	first strand
Strand 2	B	618	621	parallel
Strand 3	B	625	627	anti-parallel
Strand 4	B	702	705	parallel
Strand 5	B	722	725	parallel
Strand 6	B	714	717	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	570	572	first strand
Strand 2	B	538	541	parallel
Strand 3	B	505	508	parallel
Strand 4	B	739	744	anti-parallel
Strand 5	B	750	755	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	664	665	first strand
Strand 2	B	684	686	parallel
Strand 3	B	674	676	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	498	501	first strand
Strand 2	C	618	621	parallel
Strand 3	C	625	628	anti-parallel
Strand 4	C	702	705	parallel
Strand 5	C	722	725	parallel
Strand 6	C	714	717	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	570	572	first strand
Strand 2	C	538	541	parallel
Strand 3	C	505	508	parallel
Strand 4	C	739	744	anti-parallel
Strand 5	C	750	755	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	664	665	first strand
Strand 2	C	684	686	parallel
Strand 3	C	674	676	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	498	501	first strand
Strand 2	D	618	621	parallel
Strand 3	D	625	628	anti-parallel
Strand 4	D	702	705	parallel
Strand 5	D	722	725	parallel
Strand 6	D	714	717	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	570	572	first strand
Strand 2	D	538	541	parallel
Strand 3	D	505	508	parallel
Strand 4	D	739	744	anti-parallel
Strand 5	D	750	755	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	664	665	first strand
Strand 2	D	684	686	parallel
Strand 3	D	674	676	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	498	501	first strand
Strand 2	E	618	621	parallel
Strand 3	E	625	628	anti-parallel
Strand 4	E	702	705	parallel
Strand 5	E	722	725	parallel
Strand 6	E	714	717	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	570	572	first strand
Strand 2	E	538	541	parallel
Strand 3	E	505	508	parallel
Strand 4	E	739	744	anti-parallel
Strand 5	E	750	755	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	664	665	first strand
Strand 2	E	684	686	parallel
Strand 3	E	674	676	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	498	501	first strand
Strand 2	F	618	621	parallel
Strand 3	F	625	627	anti-parallel
Strand 4	F	702	705	parallel
Strand 5	F	722	725	parallel
Strand 6	F	714	717	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	570	572	first strand
Strand 2	F	538	541	parallel
Strand 3	F	505	508	parallel
Strand 4	F	739	744	anti-parallel
Strand 5	F	750	755	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	664	665	first strand
Strand 2	F	685	686	parallel
Strand 3	F	674	675	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9TP7

Analysis of interatomic Contacts of Structural Units in PDB entry:
9TP7