Analysis of interatomic Contacts of Structural Units in PDB entry:
9TP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9TP8 entry

There is 1 chain in PDB entry 9TP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 451GLU 806
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9TP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
451 461Right-handed alpha
Helix 2
AA2
A
477 494Right-handed alpha
Helix 3
AA3
A
514 526Right-handed alpha
Helix 4
AA4
A
551 566Right-handed alpha
Helix 5
AA5
A
579 584Right-handed alpha
Helix 6
AA6
A
587 597Right-handed alpha
Helix 7
AA7
A
597 613Right-handed alpha
Helix 8
AA8
A
637 643Right-handed alpha
Helix 9
AA9
A
649 653Right-handed 310
Helix 10
AB1
A
654 663Right-handed alpha
Helix 11
AB2
A
687 699Right-handed alpha
Helix 12
AB3
A
710 712Right-handed 310
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There are 3 sheets in PDB entry 9TP8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 501first strand
Strand 2
A
618 621parallel
Strand 3
A
625 628anti-parallel
Strand 4
A
702 705parallel
Strand 5
A
722 725parallel
Strand 6
A
714 717anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
570 572first strand
Strand 2
A
538 541parallel
Strand 3
A
505 508parallel
Strand 4
A
739 744anti-parallel
Strand 5
A
750 755anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
664 665first strand
Strand 2
A
684 686parallel
Strand 3
A
674 676anti-parallel
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