Analysis of interatomic Contacts of Structural Units in PDB entry:
9TPA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9TPA entry

There are 2 chains in PDB entry 9TPA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 56	VAL 1083
B	GLU 18	SER 484

There are 59 helices in PDB entry 9TPA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	88	Right-handed alpha
Helix 2	AA2	A	111	116	Right-handed alpha
Helix 3	AA3	A	122	136	Right-handed alpha
Helix 4	AA4	A	144	165	Right-handed alpha
Helix 5	AA5	A	170	174	Right-handed 310
Helix 6	AA6	A	189	208	Right-handed alpha
Helix 7	AA7	A	241	253	Right-handed alpha
Helix 8	AA8	A	254	259	Right-handed 310
Helix 9	AA9	A	304	308	Right-handed alpha
Helix 10	AB1	A	310	322	Right-handed alpha
Helix 11	AB2	A	324	339	Right-handed alpha
Helix 12	AB3	A	369	384	Right-handed alpha
Helix 13	AB4	A	394	398	Right-handed 310
Helix 14	AB5	A	405	410	Right-handed 310
Helix 15	AB6	A	414	419	Right-handed alpha
Helix 16	AB7	A	419	437	Right-handed alpha
Helix 17	AB8	A	463	467	Right-handed 310
Helix 18	AB9	A	468	477	Right-handed alpha
Helix 19	AC1	A	478	497	Right-handed alpha
Helix 20	AC2	A	512	514	Right-handed 310
Helix 21	AC3	A	521	535	Right-handed alpha
Helix 22	AC4	A	536	554	Right-handed alpha
Helix 23	AC5	A	576	582	Right-handed alpha
Helix 24	AC6	A	582	592	Right-handed alpha
Helix 25	AC7	A	595	600	Right-handed alpha
Helix 26	AC8	A	639	643	Right-handed 310
Helix 27	AC9	A	660	664	Right-handed 310
Helix 28	AD1	A	668	674	Right-handed alpha
Helix 29	AD2	A	675	680	Right-handed alpha
Helix 30	AD3	A	695	699	Right-handed 310
Helix 31	AD4	A	709	713	Right-handed 310
Helix 32	AD5	A	730	736	Right-handed alpha
Helix 33	AD6	A	747	752	Right-handed alpha
Helix 34	AD7	A	753	756	Right-handed 310
Helix 35	AD8	A	806	812	Right-handed alpha
Helix 36	AD9	A	928	933	Right-handed alpha
Helix 37	AE1	A	947	951	Right-handed 310
Helix 38	AE2	A	986	994	Right-handed alpha
Helix 39	AE3	A	1050	1058	Right-handed alpha
Helix 40	AE4	B	27	38	Right-handed alpha
Helix 41	AE5	B	50	67	Right-handed alpha
Helix 42	AE6	B	68	70	Right-handed 310
Helix 43	AE7	B	82	90	Right-handed alpha
Helix 44	AE8	B	114	127	Right-handed alpha
Helix 45	AE9	B	136	143	Right-handed alpha
Helix 46	AF1	B	157	171	Right-handed alpha
Helix 47	AF2	B	182	190	Right-handed alpha
Helix 48	AF3	B	214	226	Right-handed alpha
Helix 49	AF4	B	234	242	Right-handed alpha
Helix 50	AF5	B	255	273	Right-handed alpha
Helix 51	AF6	B	287	295	Right-handed 310
Helix 52	AF7	B	324	337	Right-handed alpha
Helix 53	AF8	B	361	363	Right-handed 310
Helix 54	AF9	B	364	369	Right-handed alpha
Helix 55	AG1	B	385	405	Right-handed alpha
Helix 56	AG2	B	406	409	Right-handed 310
Helix 57	AG3	B	452	464	Right-handed alpha
Helix 58	AG4	B	471	476	Right-handed alpha
Helix 59	AG5	B	478	482	Right-handed 310

There are 20 sheets in PDB entry 9TPA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	95	first strand
Strand 2	A	100	102	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	188	first strand
Strand 2	A	268	270	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	232	first strand
Strand 2	A	238	239	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	303	first strand
Strand 2	A	350	352	anti-parallel
Strand 3	A	358	359	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	363	first strand
Strand 2	A	449	451	anti-parallel
Strand 3	A	457	459	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	440	first strand
Strand 2	A	446	447	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	462	first strand
Strand 2	A	503	504	anti-parallel
Strand 3	A	509	510	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	555	556	first strand
Strand 2	A	559	560	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	562	563	first strand
Strand 2	A	571	572	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	605	606	first strand
Strand 2	A	612	613	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	719	720	first strand
Strand 2	B	93	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	726	729	first strand
Strand 2	A	772	776	anti-parallel
Strand 3	A	785	789	anti-parallel
Strand 4	A	792	793	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	761	763	first strand
Strand 2	A	799	801	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	914	917	first strand
Strand 2	A	823	829	anti-parallel
Strand 3	A	1062	1066	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	956	958	first strand
Strand 2	A	977	981	parallel
Strand 3	A	1006	1011	parallel
Strand 4	A	1044	1048	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1072	1073	first strand
Strand 2	A	1076	1077	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	25	first strand
Strand 2	B	73	78	parallel
Strand 3	B	41	46	parallel
Strand 4	B	96	100	anti-parallel
Strand 5	B	106	108	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	132	first strand
Strand 2	B	177	180	parallel
Strand 3	B	147	152	parallel
Strand 4	B	195	200	anti-parallel
Strand 5	B	206	208	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	232	first strand
Strand 2	B	278	283	parallel
Strand 3	B	248	253	parallel
Strand 4	B	303	308	anti-parallel
Strand 5	B	313	316	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	360	first strand
Strand 2	B	411	417	parallel
Strand 3	B	375	381	parallel
Strand 4	B	432	436	anti-parallel
Strand 5	B	445	446	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9TPA

Analysis of interatomic Contacts of Structural Units in PDB entry:
9TPA