Analysis of interatomic Contacts of Structural Units in PDB entry:
9TPE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9TPE entry

There are 2 chains in PDB entry 9TPE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ALA 241
B
 SER 1SER 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9TPE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 27Right-handed alpha
Helix 2
AA2
A
46 50Right-handed alpha
Helix 3
AA3
A
91 97Right-handed 310
Helix 4
AA4
A
111 116Right-handed alpha
Helix 5
AA5
A
124 137Right-handed alpha
Helix 6
AA6
A
140 158Right-handed alpha
Helix 7
AA7
A
158 172Right-handed alpha
Helix 8
AA8
A
178 198Right-handed alpha
Helix 9
AA9
A
223 227Right-handed alpha
Helix 10
AB1
B
14 18Right-handed 310
Helix 11
AB2
B
24 26Right-handed 310
Helix 12
AB3
B
41 45Right-handed 310
Helix 13
AB4
B
81 86Right-handed 310
Helix 14
AB5
B
123 127Right-handed 310
Helix 15
AB6
B
144 148Right-handed 310
Helix 16
AB7
B
168 171Right-handed 310
Helix 17
AB8
B
210 214Right-handed 310
Helix 18
AB9
B
236 242Right-handed 310
Helix 19
AC1
B
252 256Right-handed 310
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There are 12 sheets in PDB entry 9TPE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
51 57parallel
Strand 3
A
63 69anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 33first strand
Strand 2
A
36 39anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
83 86anti-parallel
Strand 3
A
102 105parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 211first strand
Strand 2
A
217 222anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 75first strand
Strand 2
B
59 63anti-parallel
Strand 3
B
54 56anti-parallel
Strand 4
B
46 48anti-parallel
Strand 5
B
9 13anti-parallel
Strand 6
B
129 131anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 22first strand
Strand 2
B
33 36anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 89first strand
Strand 2
B
95 97anti-parallel
Strand 3
B
102 105anti-parallel
Strand 4
B
116 118anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 143first strand
Strand 2
B
258 260anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 152first strand
Strand 2
B
159 162anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 175first strand
Strand 2
B
181 183anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 193first strand
Strand 2
B
202 206anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 217first strand
Strand 2
B
223 225anti-parallel
Strand 3
B
230 234anti-parallel
Strand 4
B
244 247anti-parallel
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