Analysis of interatomic Contacts of Structural Units in PDB entry:
9TPJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9TPJ entry

There are 10 chains in PDB entry 9TPJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	TYR 128
A	TRP 130	PHE 548
A	ALA 550	GLU 927
B	ASP 3	TYR 128
B	TRP 130	PHE 548
B	ALA 550	ARG 925
C	ALA 39	SER 195
D	ASP 38	SER 195
E	SER 19	GLU 163
F	MET 20	GLY 162

There are109 helices in PDB entry 9TPJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	16	Right-handed 310
Helix 2	AA2	A	19	29	Right-handed alpha
Helix 3	AA3	A	81	85	Right-handed 310
Helix 4	AA4	A	97	111	Right-handed alpha
Helix 5	AA5	A	135	142	Right-handed alpha
Helix 6	AA6	A	153	169	Right-handed alpha
Helix 7	AA7	A	183	201	Right-handed alpha
Helix 8	AA8	A	215	231	Right-handed alpha
Helix 9	AA9	A	270	275	Right-handed alpha
Helix 10	AB1	A	283	290	Right-handed alpha
Helix 11	AB2	A	294	301	Right-handed alpha
Helix 12	AB3	A	306	310	Right-handed 310
Helix 13	AB4	A	324	340	Right-handed alpha
Helix 14	AB5	A	342	360	Right-handed alpha
Helix 15	AB6	A	380	389	Right-handed alpha
Helix 16	AB7	A	391	401	Right-handed alpha
Helix 17	AB8	A	416	448	Right-handed alpha
Helix 18	AB9	A	475	495	Right-handed alpha
Helix 19	AC1	A	495	504	Right-handed alpha
Helix 20	AC2	A	517	523	Right-handed alpha
Helix 21	AC3	A	529	539	Right-handed alpha
Helix 22	AC4	A	544	556	Right-handed alpha
Helix 23	AC5	A	592	599	Right-handed alpha
Helix 24	AC6	A	602	611	Right-handed alpha
Helix 25	AC7	A	616	621	Right-handed alpha
Helix 26	AC8	A	639	644	Right-handed alpha
Helix 27	AC9	A	646	664	Right-handed alpha
Helix 28	AD1	A	685	697	Right-handed alpha
Helix 29	AD2	A	715	722	Right-handed alpha
Helix 30	AD3	A	723	726	Right-handed 310
Helix 31	AD4	A	731	736	Right-handed 310
Helix 32	AD5	A	737	749	Right-handed alpha
Helix 33	AD6	A	768	781	Right-handed alpha
Helix 34	AD7	A	781	823	Right-handed alpha
Helix 35	AD8	A	826	837	Right-handed alpha
Helix 36	AD9	A	838	843	Right-handed 310
Helix 37	AE1	A	847	926	Right-handed alpha
Helix 38	AE2	B	4	10	Right-handed alpha
Helix 39	AE3	B	11	16	Right-handed 310
Helix 40	AE4	B	19	29	Right-handed alpha
Helix 41	AE5	B	81	85	Right-handed 310
Helix 42	AE6	B	97	111	Right-handed alpha
Helix 43	AE7	B	135	142	Right-handed alpha
Helix 44	AE8	B	153	169	Right-handed alpha
Helix 45	AE9	B	183	198	Right-handed alpha
Helix 46	AF1	B	216	231	Right-handed alpha
Helix 47	AF2	B	270	274	Right-handed 310
Helix 48	AF3	B	283	290	Right-handed alpha
Helix 49	AF4	B	294	302	Right-handed alpha
Helix 50	AF5	B	306	310	Right-handed 310
Helix 51	AF6	B	324	339	Right-handed alpha
Helix 52	AF7	B	342	361	Right-handed alpha
Helix 53	AF8	B	378	389	Right-handed alpha
Helix 54	AF9	B	391	401	Right-handed alpha
Helix 55	AG1	B	416	448	Right-handed alpha
Helix 56	AG2	B	472	494	Right-handed alpha
Helix 57	AG3	B	497	504	Right-handed alpha
Helix 58	AG4	B	517	526	Right-handed alpha
Helix 59	AG5	B	529	540	Right-handed alpha
Helix 60	AG6	B	544	555	Right-handed alpha
Helix 61	AG7	B	594	599	Right-handed alpha
Helix 62	AG8	B	602	611	Right-handed alpha
Helix 63	AG9	B	614	621	Right-handed alpha
Helix 64	AH1	B	646	664	Right-handed alpha
Helix 65	AH2	B	685	696	Right-handed alpha
Helix 66	AH3	B	697	707	Right-handed alpha
Helix 67	AH4	B	715	723	Right-handed alpha
Helix 68	AH5	B	738	748	Right-handed alpha
Helix 69	AH6	B	768	827	Right-handed alpha
Helix 70	AH7	B	827	837	Right-handed alpha
Helix 71	AH8	B	843	925	Right-handed alpha
Helix 72	AH9	C	47	60	Right-handed alpha
Helix 73	AI1	C	75	83	Right-handed alpha
Helix 74	AI2	C	88	95	Right-handed alpha
Helix 75	AI3	C	102	107	Right-handed alpha
Helix 76	AI4	C	114	125	Right-handed alpha
Helix 77	AI5	C	129	138	Right-handed alpha
Helix 78	AI6	C	150	159	Right-handed alpha
Helix 79	AI7	C	165	173	Right-handed alpha
Helix 80	AI8	C	184	195	Right-handed alpha
Helix 81	AI9	D	47	57	Right-handed alpha
Helix 82	AJ1	D	64	68	Right-handed 310
Helix 83	AJ2	D	72	76	Right-handed 310
Helix 84	AJ3	D	78	83	Right-handed alpha
Helix 85	AJ4	D	88	95	Right-handed alpha
Helix 86	AJ5	D	110	112	Right-handed 310
Helix 87	AJ6	D	113	125	Right-handed alpha
Helix 88	AJ7	D	129	139	Right-handed alpha
Helix 89	AJ8	D	150	160	Right-handed alpha
Helix 90	AJ9	D	165	173	Right-handed alpha
Helix 91	AK1	D	185	195	Right-handed alpha
Helix 92	AK2	E	27	36	Right-handed alpha
Helix 93	AK3	E	47	52	Right-handed alpha
Helix 94	AK4	E	53	55	Right-handed 310
Helix 95	AK5	E	64	69	Right-handed alpha
Helix 96	AK6	E	79	86	Right-handed alpha
Helix 97	AK7	E	86	91	Right-handed alpha
Helix 98	AK8	E	95	107	Right-handed alpha
Helix 99	AK9	E	115	123	Right-handed alpha
Helix 100	AL1	E	124	126	Right-handed 310
Helix 101	AL2	E	131	142	Right-handed alpha
Helix 102	AL3	E	151	160	Right-handed alpha
Helix 103	AL4	F	22	37	Right-handed alpha
Helix 104	AL5	F	45	55	Right-handed alpha
Helix 105	AL6	F	65	73	Right-handed alpha
Helix 106	AL7	F	78	90	Right-handed alpha
Helix 107	AL8	F	95	107	Right-handed alpha
Helix 108	AL9	F	116	124	Right-handed alpha
Helix 109	AM1	F	153	161	Right-handed alpha

There are 16 sheets in PDB entry 9TPJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	40	first strand
Strand 2	A	46	50	anti-parallel
Strand 3	A	59	63	anti-parallel
Strand 4	A	68	71	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	118	first strand
Strand 2	A	121	125	anti-parallel
Strand 3	A	666	673	parallel
Strand 4	A	172	177	parallel
Strand 5	A	455	461	parallel
Strand 6	A	246	252	anti-parallel
Strand 7	A	258	262	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	233	first strand
Strand 2	A	241	242	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	366	first strand
Strand 2	A	373	377	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	406	first strand
Strand 2	A	409	412	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	564	first strand
Strand 2	A	577	579	anti-parallel
Strand 3	A	587	588	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	714	first strand
Strand 2	A	762	764	anti-parallel
Strand 3	A	757	759	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	71	first strand
Strand 2	B	58	63	anti-parallel
Strand 3	B	46	55	anti-parallel
Strand 4	B	36	40	anti-parallel
Strand 5	B	77	78	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	122	125	anti-parallel
Strand 3	B	666	673	parallel
Strand 4	B	172	178	parallel
Strand 5	B	455	461	parallel
Strand 6	B	246	252	anti-parallel
Strand 7	B	258	260	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	233	first strand
Strand 2	B	241	242	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	365	first strand
Strand 2	B	374	375	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	577	581	first strand
Strand 2	B	584	588	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	714	first strand
Strand 2	B	762	765	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	71	first strand
Strand 2	C	109	110	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	149	first strand
Strand 2	C	182	183	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	149	first strand
Strand 2	D	182	184	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9TPJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9TPJ