Analysis of interatomic Contacts of Structural Units in PDB entry:
9TPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9TPM entry

There is 1 chain in PDB entry 9TPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 20ASP 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 9TPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 32Right-handed alpha
Helix 2
AA2
A
105 113Right-handed alpha
Helix 3
AA3
A
117 127Right-handed alpha
Helix 4
AA4
A
138 142Right-handed 310
Helix 5
AA5
A
235 240Right-handed 310
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There is 1 sheet (AA1) in PDB entry 9TPM.

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 145first strand
Strand 2
A
153 157anti-parallel
Strand 3
A
163 168anti-parallel
Strand 4
A
174 181anti-parallel
Strand 5
A
186 191anti-parallel
Strand 6
A
207 214anti-parallel
Strand 7
A
217 230anti-parallel
Strand 8
A
38 49anti-parallel
Strand 9
A
52 63anti-parallel
Strand 10
A
67 73anti-parallel
Strand 11
A
81 86anti-parallel
Strand 12
A
89 94anti-parallel
Strand 13
A
99 104anti-parallel
Strand 14
A
249 250parallel
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