Analysis of interatomic Contacts of Structural Units in PDB entry:
9TPY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9TPY entry

There are 4 chains in PDB entry 9TPY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 52	ALA 460
B	THR 52	TYR 456
C	THR 52	TYR 456
D	THR 52	THR 160

There are 98 helices in PDB entry 9TPY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	63	Right-handed alpha
Helix 2	AA2	A	71	77	Right-handed alpha
Helix 3	AA3	A	138	142	Right-handed 310
Helix 4	AA4	A	166	177	Right-handed alpha
Helix 5	AA5	A	204	223	Right-handed alpha
Helix 6	AA6	A	224	233	Right-handed alpha
Helix 7	AA7	A	275	284	Right-handed alpha
Helix 8	AA8	A	324	327	Right-handed 310
Helix 9	AA9	A	328	333	Right-handed alpha
Helix 10	AB1	A	341	356	Right-handed alpha
Helix 11	AB2	A	424	440	Right-handed alpha
Helix 12	AB3	A	449	453	Right-handed 310
Helix 13	AB4	B	57	64	Right-handed alpha
Helix 14	AB5	B	71	77	Right-handed alpha
Helix 15	AB6	B	138	142	Right-handed 310
Helix 16	AB7	B	166	177	Right-handed alpha
Helix 17	AB8	B	204	223	Right-handed alpha
Helix 18	AB9	B	224	233	Right-handed alpha
Helix 19	AC1	B	266	270	Right-handed 310
Helix 20	AC2	B	275	284	Right-handed alpha
Helix 21	AC3	B	325	327	Right-handed 310
Helix 22	AC4	B	328	333	Right-handed alpha
Helix 23	AC5	B	341	356	Right-handed alpha
Helix 24	AC6	B	424	440	Right-handed alpha
Helix 25	AC7	B	446	450	Right-handed 310
Helix 26	AC8	C	57	64	Right-handed alpha
Helix 27	AC9	C	71	77	Right-handed alpha
Helix 28	AD1	C	138	142	Right-handed 310
Helix 29	AD2	C	166	177	Right-handed alpha
Helix 30	AD3	C	204	223	Right-handed alpha
Helix 31	AD4	C	224	233	Right-handed alpha
Helix 32	AD5	C	266	273	Right-handed 310
Helix 33	AD6	C	275	284	Right-handed alpha
Helix 34	AD7	C	325	327	Right-handed 310
Helix 35	AD8	C	328	333	Right-handed alpha
Helix 36	AD9	C	341	356	Right-handed alpha
Helix 37	AE1	C	424	440	Right-handed alpha
Helix 38	AE2	D	57	64	Right-handed alpha
Helix 39	AE3	D	71	77	Right-handed alpha
Helix 40	AE4	D	138	142	Right-handed 310
Helix 41	AE5	D	166	177	Right-handed alpha
Helix 42	AE6	D	204	224	Right-handed alpha
Helix 43	AE7	D	224	233	Right-handed alpha
Helix 44	AE8	D	275	284	Right-handed alpha
Helix 45	AE9	D	325	327	Right-handed 310
Helix 46	AF1	D	328	333	Right-handed alpha
Helix 47	AF2	D	341	356	Right-handed alpha
Helix 48	AF3	D	424	440	Right-handed alpha
Helix 49	AF4	D	446	450	Right-handed 310
Helix 50	AF5	E	57	64	Right-handed alpha
Helix 51	AF6	E	71	77	Right-handed alpha
Helix 52	AF7	E	138	142	Right-handed 310
Helix 53	AF8	E	166	177	Right-handed alpha
Helix 54	AF9	E	204	223	Right-handed alpha
Helix 55	AG1	E	224	233	Right-handed alpha
Helix 56	AG2	E	275	284	Right-handed alpha
Helix 57	AG3	E	324	328	Right-handed alpha
Helix 58	AG4	E	328	333	Right-handed alpha
Helix 59	AG5	E	341	356	Right-handed alpha
Helix 60	AG6	E	424	440	Right-handed alpha
Helix 61	AG7	E	446	450	Right-handed 310
Helix 62	AG8	F	57	64	Right-handed alpha
Helix 63	AG9	F	71	77	Right-handed alpha
Helix 64	AH1	F	138	142	Right-handed 310
Helix 65	AH2	F	166	177	Right-handed alpha
Helix 66	AH3	F	204	223	Right-handed alpha
Helix 67	AH4	F	224	233	Right-handed alpha
Helix 68	AH5	F	275	284	Right-handed alpha
Helix 69	AH6	F	325	327	Right-handed 310
Helix 70	AH7	F	328	333	Right-handed alpha
Helix 71	AH8	F	341	356	Right-handed alpha
Helix 72	AH9	F	424	440	Right-handed alpha
Helix 73	AI1	F	446	450	Right-handed 310
Helix 74	AI2	G	57	64	Right-handed alpha
Helix 75	AI3	G	71	77	Right-handed alpha
Helix 76	AI4	G	138	142	Right-handed 310
Helix 77	AI5	G	166	177	Right-handed alpha
Helix 78	AI6	G	204	223	Right-handed alpha
Helix 79	AI7	G	224	233	Right-handed alpha
Helix 80	AI8	G	275	284	Right-handed alpha
Helix 81	AI9	G	325	327	Right-handed 310
Helix 82	AJ1	G	328	333	Right-handed alpha
Helix 83	AJ2	G	341	356	Right-handed alpha
Helix 84	AJ3	G	424	440	Right-handed alpha
Helix 85	AJ4	G	446	450	Right-handed 310
Helix 86	AJ5	H	57	64	Right-handed alpha
Helix 87	AJ6	H	71	77	Right-handed alpha
Helix 88	AJ7	H	138	142	Right-handed 310
Helix 89	AJ8	H	166	177	Right-handed alpha
Helix 90	AJ9	H	196	200	Right-handed 310
Helix 91	AK1	H	204	223	Right-handed alpha
Helix 92	AK2	H	224	233	Right-handed alpha
Helix 93	AK3	H	275	284	Right-handed alpha
Helix 94	AK4	H	325	327	Right-handed 310
Helix 95	AK5	H	328	333	Right-handed alpha
Helix 96	AK6	H	341	356	Right-handed alpha
Helix 97	AK7	H	424	440	Right-handed alpha
Helix 98	AK8	H	447	451	Right-handed 310

There are 40 sheets in PDB entry 9TPY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	56	first strand
Strand 2	A	120	129	parallel
Strand 3	A	106	114	anti-parallel
Strand 4	A	157	161	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	67	first strand
Strand 2	A	133	137	anti-parallel
Strand 3	A	96	100	anti-parallel
Strand 4	A	86	90	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	81	first strand
Strand 2	A	183	187	anti-parallel
Strand 3	A	287	293	parallel
Strand 4	A	317	322	parallel
Strand 5	A	302	305	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	370	first strand
Strand 2	A	387	388	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	381	first strand
Strand 2	A	384	385	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	120	129	parallel
Strand 3	B	106	114	anti-parallel
Strand 4	B	157	161	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	133	137	anti-parallel
Strand 3	B	96	100	anti-parallel
Strand 4	B	86	90	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	81	first strand
Strand 2	B	183	187	anti-parallel
Strand 3	B	287	294	parallel
Strand 4	B	200	201	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	81	first strand
Strand 2	B	183	187	anti-parallel
Strand 3	B	287	294	parallel
Strand 4	B	316	323	parallel
Strand 5	B	302	305	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	370	first strand
Strand 2	B	387	388	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	56	first strand
Strand 2	C	120	129	parallel
Strand 3	C	106	114	anti-parallel
Strand 4	C	157	161	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	67	first strand
Strand 2	C	133	137	anti-parallel
Strand 3	C	96	100	anti-parallel
Strand 4	C	86	90	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	81	first strand
Strand 2	C	183	187	anti-parallel
Strand 3	C	287	294	parallel
Strand 4	C	319	323	parallel
Strand 5	C	302	304	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	369	370	first strand
Strand 2	C	387	388	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	56	first strand
Strand 2	D	120	129	parallel
Strand 3	D	106	114	anti-parallel
Strand 4	D	158	161	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	67	first strand
Strand 2	D	133	137	anti-parallel
Strand 3	D	96	100	anti-parallel
Strand 4	D	86	90	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	81	first strand
Strand 2	D	183	187	anti-parallel
Strand 3	D	287	294	parallel
Strand 4	D	200	201	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	81	first strand
Strand 2	D	183	187	anti-parallel
Strand 3	D	287	294	parallel
Strand 4	D	316	323	parallel
Strand 5	D	302	304	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	369	370	first strand
Strand 2	D	387	388	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	372	374	first strand
Strand 2	D	377	378	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	55	56	first strand
Strand 2	E	120	129	parallel
Strand 3	E	106	114	anti-parallel
Strand 4	E	157	161	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	67	first strand
Strand 2	E	133	137	anti-parallel
Strand 3	E	96	100	anti-parallel
Strand 4	E	86	90	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	81	first strand
Strand 2	E	183	187	anti-parallel
Strand 3	E	287	294	parallel
Strand 4	E	200	201	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	81	first strand
Strand 2	E	183	187	anti-parallel
Strand 3	E	287	294	parallel
Strand 4	E	319	323	parallel
Strand 5	E	302	304	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	369	370	first strand
Strand 2	E	387	388	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	55	56	first strand
Strand 2	F	120	129	parallel
Strand 3	F	106	114	anti-parallel
Strand 4	F	157	161	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	67	first strand
Strand 2	F	133	137	anti-parallel
Strand 3	F	96	100	anti-parallel
Strand 4	F	86	90	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	79	81	first strand
Strand 2	F	183	187	anti-parallel
Strand 3	F	287	294	parallel
Strand 4	F	200	201	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	79	81	first strand
Strand 2	F	183	187	anti-parallel
Strand 3	F	287	294	parallel
Strand 4	F	317	323	parallel
Strand 5	F	302	305	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	369	370	first strand
Strand 2	F	387	388	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	372	373	first strand
Strand 2	F	377	378	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	54	56	first strand
Strand 2	G	124	129	parallel
Strand 3	G	106	113	anti-parallel
Strand 4	G	157	161	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	65	67	first strand
Strand 2	G	133	137	anti-parallel
Strand 3	G	96	100	anti-parallel
Strand 4	G	86	90	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	79	81	first strand
Strand 2	G	183	187	anti-parallel
Strand 3	G	287	294	parallel
Strand 4	G	200	201	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	79	81	first strand
Strand 2	G	183	187	anti-parallel
Strand 3	G	287	294	parallel
Strand 4	G	318	323	parallel
Strand 5	G	302	305	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	369	370	first strand
Strand 2	G	387	388	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	55	56	first strand
Strand 2	H	120	129	parallel
Strand 3	H	106	114	anti-parallel
Strand 4	H	157	161	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	65	67	first strand
Strand 2	H	133	137	anti-parallel
Strand 3	H	96	100	anti-parallel
Strand 4	H	86	89	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	79	81	first strand
Strand 2	H	183	187	anti-parallel
Strand 3	H	287	294	parallel
Strand 4	H	317	323	parallel
Strand 5	H	303	305	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	369	370	first strand
Strand 2	H	387	388	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9TPY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9TPY