Analysis of interatomic Contacts of Structural Units in PDB entry:
9TQ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9TQ4 entry

There are 4 chains in PDB entry 9TQ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 13LEU 867
B
 U -142 U 20
C
 A -10 C 15
D
 G -23 T 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 9TQ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 43Right-handed alpha
Helix 2
AA2
A
44 47Right-handed 310
Helix 3
AA3
A
49 59Right-handed alpha
Helix 4
AA4
A
59 72Right-handed alpha
Helix 5
AA5
A
160 169Right-handed alpha
Helix 6
AA6
A
170 172Right-handed 310
Helix 7
AA7
A
175 188Right-handed alpha
Helix 8
AA8
A
190 203Right-handed alpha
Helix 9
AA9
A
207 217Right-handed alpha
Helix 10
AB1
A
220 226Right-handed alpha
Helix 11
AB2
A
228 237Right-handed alpha
Helix 12
AB3
A
241 243Right-handed 310
Helix 13
AB4
A
244 271Right-handed alpha
Helix 14
AB5
A
276 296Right-handed alpha
Helix 15
AB6
A
316 330Right-handed alpha
Helix 16
AB7
A
331 336Right-handed alpha
Helix 17
AB8
A
346 360Right-handed alpha
Helix 18
AB9
A
371 375Right-handed 310
Helix 19
AC1
A
451 462Right-handed alpha
Helix 20
AC2
A
470 473Right-handed 310
Helix 21
AC3
A
556 580Right-handed alpha
Helix 22
AC4
A
583 603Right-handed alpha
Helix 23
AC5
A
606 625Right-handed alpha
Helix 24
AC6
A
637 641Right-handed 310
Helix 25
AC7
A
643 647Right-handed 310
Helix 26
AC8
A
651 666Right-handed alpha
Helix 27
AC9
A
699 710Right-handed alpha
Helix 28
AD1
A
715 719Right-handed 310
Helix 29
AD2
A
802 817Right-handed alpha
Helix 30
AD3
A
825 837Right-handed alpha
Helix 31
AD4
A
838 840Right-handed 310
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There are 9 sheets in PDB entry 9TQ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
140 141parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
493 502anti-parallel
Strand 3
A
475 485anti-parallel
Strand 4
A
377 382anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
493 502anti-parallel
Strand 3
A
152 154anti-parallel
Strand 4
A
443 449anti-parallel
Strand 5
A
401 406anti-parallel
Strand 6
A
389 393anti-parallel
Strand 7
A
418 420anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
680 683first strand
Strand 2
A
629 634parallel
Strand 3
A
523 529parallel
Strand 4
A
533 541anti-parallel
Strand 5
A
546 554anti-parallel
Strand 6
A
841 842parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
670 671first strand
Strand 2
A
676 677anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
737 739first strand
Strand 2
A
857 866anti-parallel
Strand 3
A
847 854anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
742 743first strand
Strand 2
A
759 760anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
780 783first strand
Strand 2
A
798 801anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
788 789first strand
Strand 2
A
792 793anti-parallel
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