Analysis of interatomic Contacts of Structural Units in PDB entry:
9TQ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9TQ8 entry

There are 4 chains in PDB entry 9TQ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 82	ASP 468
B	SER 82	ASP 468
C	SER 82	ASP 468
D	SER 82	ASP 468

There are 12 helices in PDB entry 9TQ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	104	109	Right-handed alpha
Helix 2	AA2	A	142	146	Right-handed 310
Helix 3	AA3	A	168	172	Right-handed 310
Helix 4	AA4	B	104	109	Right-handed alpha
Helix 5	AA5	B	142	146	Right-handed 310
Helix 6	AA6	B	168	172	Right-handed 310
Helix 7	AA7	C	104	109	Right-handed alpha
Helix 8	AA8	C	142	146	Right-handed 310
Helix 9	AA9	C	168	172	Right-handed 310
Helix 10	AB1	D	104	109	Right-handed alpha
Helix 11	AB2	D	142	146	Right-handed 310
Helix 12	AB3	D	168	172	Right-handed 310

There are 28 sheets in PDB entry 9TQ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	102	first strand
Strand 2	A	438	448	anti-parallel
Strand 3	A	419	429	anti-parallel
Strand 4	A	406	408	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	117	first strand
Strand 2	A	129	139	anti-parallel
Strand 3	A	121	124	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	117	first strand
Strand 2	A	129	139	anti-parallel
Strand 3	A	157	162	anti-parallel
Strand 4	A	173	176	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	183	first strand
Strand 2	A	191	196	anti-parallel
Strand 3	A	203	208	anti-parallel
Strand 4	A	212	217	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	225	first strand
Strand 2	A	238	244	anti-parallel
Strand 3	A	252	258	anti-parallel
Strand 4	A	263	268	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	284	first strand
Strand 2	A	287	291	anti-parallel
Strand 3	A	302	306	anti-parallel
Strand 4	A	312	316	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	361	first strand
Strand 2	A	369	375	anti-parallel
Strand 3	A	389	399	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	102	first strand
Strand 2	B	438	448	anti-parallel
Strand 3	B	419	429	anti-parallel
Strand 4	B	406	408	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	117	first strand
Strand 2	B	129	139	anti-parallel
Strand 3	B	121	124	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	117	first strand
Strand 2	B	129	139	anti-parallel
Strand 3	B	157	162	anti-parallel
Strand 4	B	173	176	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	183	first strand
Strand 2	B	191	196	anti-parallel
Strand 3	B	203	208	anti-parallel
Strand 4	B	212	217	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	225	first strand
Strand 2	B	238	244	anti-parallel
Strand 3	B	252	258	anti-parallel
Strand 4	B	263	268	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	284	first strand
Strand 2	B	287	291	anti-parallel
Strand 3	B	302	306	anti-parallel
Strand 4	B	312	316	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	361	first strand
Strand 2	B	369	375	anti-parallel
Strand 3	B	389	399	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	102	first strand
Strand 2	C	438	448	anti-parallel
Strand 3	C	419	429	anti-parallel
Strand 4	C	406	408	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	117	first strand
Strand 2	C	129	139	anti-parallel
Strand 3	C	121	124	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	117	first strand
Strand 2	C	129	139	anti-parallel
Strand 3	C	157	162	anti-parallel
Strand 4	C	173	176	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	183	first strand
Strand 2	C	191	196	anti-parallel
Strand 3	C	203	208	anti-parallel
Strand 4	C	212	217	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	225	first strand
Strand 2	C	238	244	anti-parallel
Strand 3	C	252	258	anti-parallel
Strand 4	C	263	268	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	284	first strand
Strand 2	C	287	291	anti-parallel
Strand 3	C	302	306	anti-parallel
Strand 4	C	312	316	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	361	first strand
Strand 2	C	369	375	anti-parallel
Strand 3	C	389	399	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	102	first strand
Strand 2	D	438	448	anti-parallel
Strand 3	D	419	429	anti-parallel
Strand 4	D	406	408	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	117	first strand
Strand 2	D	129	139	anti-parallel
Strand 3	D	121	124	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	117	first strand
Strand 2	D	129	139	anti-parallel
Strand 3	D	157	162	anti-parallel
Strand 4	D	173	176	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	180	183	first strand
Strand 2	D	191	196	anti-parallel
Strand 3	D	203	208	anti-parallel
Strand 4	D	212	217	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	225	first strand
Strand 2	D	238	244	anti-parallel
Strand 3	D	252	258	anti-parallel
Strand 4	D	263	268	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	284	first strand
Strand 2	D	287	291	anti-parallel
Strand 3	D	302	306	anti-parallel
Strand 4	D	312	316	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	359	361	first strand
Strand 2	D	369	375	anti-parallel
Strand 3	D	389	399	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9TQ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9TQ8