Analysis of interatomic Contacts of Structural Units in PDB entry:
9TQJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9TQJ entry

There are 2 chains in PDB entry 9TQJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 419
B
 SER 2SER 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 9TQJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 28Right-handed alpha
Helix 2
AA2
A
83 85Right-handed 310
Helix 3
AA3
A
107 123Right-handed alpha
Helix 4
AA4
A
142 156Right-handed alpha
Helix 5
AA5
A
181 193Right-handed alpha
Helix 6
AA6
A
201 211Right-handed alpha
Helix 7
AA7
A
217 238Right-handed alpha
Helix 8
AA8
A
245 254Right-handed alpha
Helix 9
AA9
A
279 288Right-handed alpha
Helix 10
AB1
A
316 329Right-handed alpha
Helix 11
AB2
A
366 374Right-handed alpha
Helix 12
AB3
A
401 417Right-handed alpha
Helix 13
AB4
B
11 30Right-handed alpha
Helix 14
AB5
B
67 78Right-handed alpha
Helix 15
AB6
B
97 108Right-handed alpha
Helix 16
AB7
B
110 125Right-handed alpha
Helix 17
AB8
B
140 157Right-handed alpha
Helix 18
AB9
B
178 194Right-handed alpha
Helix 19
AC1
B
202 212Right-handed alpha
Helix 20
AC2
B
219 240Right-handed alpha
Helix 21
AC3
B
247 256Right-handed alpha
Helix 22
AC4
B
282 291Right-handed alpha
Helix 23
AC5
B
292 296Right-handed 310
Helix 24
AC6
B
320 332Right-handed alpha
Helix 25
AC7
B
370 386Right-handed alpha
Helix 26
AC8
B
391 396Right-handed alpha
Helix 27
AC9
B
400 421Right-handed alpha
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There are 4 sheets in PDB entry 9TQJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
60 63parallel
Strand 3
A
3 9parallel
Strand 4
A
127 135parallel
Strand 5
A
161 167parallel
Strand 6
A
195 200parallel
Strand 7
A
261 267parallel
Strand 8
A
355 363anti-parallel
Strand 9
A
304 313anti-parallel
Strand 10
A
341 346parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
55 58anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 89first strand
Strand 2
B
61 65parallel
Strand 3
B
5 10parallel
Strand 4
B
130 136parallel
Strand 5
B
162 168parallel
Strand 6
B
196 201parallel
Strand 7
B
263 269parallel
Strand 8
B
360 367anti-parallel
Strand 9
B
307 315anti-parallel
Strand 10
B
345 350parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 51first strand
Strand 2
B
57 59anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il